Skip to content

v2: Adapt to updated yaml schema #394

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Merged
merged 1 commit into from
Jul 18, 2025
Merged

Conversation

dweindl
Copy link
Member

@dweindl dweindl commented Jul 1, 2025

Basically, the problems list is dissolved and its contents moved one level up.

See https://github.com/PEtab-dev/PEtab/pull/622/files

Closes #391.

Related to #392.

@dweindl dweindl force-pushed the multimodel branch 2 times, most recently from 4b97231 to 13cab07 Compare July 2, 2025 05:28
@codecov-commenter
Copy link

codecov-commenter commented Jul 2, 2025

Codecov Report

Attention: Patch coverage is 84.69388% with 15 lines in your changes missing coverage. Please review.

Project coverage is 74.01%. Comparing base (50994b2) to head (70eb733).

Files with missing lines Patch % Lines
petab/v2/petab1to2.py 88.88% 5 Missing and 2 partials ⚠️
petab/v2/lint.py 0.00% 0 Missing and 3 partials ⚠️
petab/v2/problem.py 90.00% 1 Missing and 2 partials ⚠️
petab/petablint.py 0.00% 2 Missing ⚠️
Additional details and impacted files
@@            Coverage Diff             @@
##             main     #394      +/-   ##
==========================================
+ Coverage   73.96%   74.01%   +0.05%     
==========================================
  Files          60       60              
  Lines        6636     6642       +6     
  Branches     1152     1154       +2     
==========================================
+ Hits         4908     4916       +8     
+ Misses       1289     1288       -1     
+ Partials      439      438       -1     

☔ View full report in Codecov by Sentry.
📢 Have feedback on the report? Share it here.

🚀 New features to boost your workflow:
  • ❄️ Test Analytics: Detect flaky tests, report on failures, and find test suite problems.

@dweindl dweindl self-assigned this Jul 2, 2025
@dweindl dweindl force-pushed the multimodel branch 2 times, most recently from 19537c9 to 8b85581 Compare July 18, 2025 11:04
@dweindl dweindl marked this pull request as ready for review July 18, 2025 11:24
@dweindl dweindl requested a review from a team as a code owner July 18, 2025 11:24
Copy link
Member

@dilpath dilpath left a comment

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

Thanks!

Comment on lines 1181 to 1183
# TODO: rename to parameter_files in yaml for consistency with other files?
# always a list?
Copy link
Member

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

delete after #641

Basically, the `problems` list is disolved and its contents moved one level up.

See https://github.com/PEtab-dev/PEtab/pull/622/files

Related to PEtab-dev#392.
@dweindl dweindl merged commit a0ceb4c into PEtab-dev:main Jul 18, 2025
7 checks passed
@dweindl dweindl deleted the multimodel branch July 18, 2025 18:05
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

Successfully merging this pull request may close these issues.

v2: Update to new yaml schema
3 participants