PHI-Canto documentation

Source files for the help pages of the PHI-Canto curation application. All pages are written in Markdown and converted to MHTML files (Mason Perl templates) by a Python script (compile_docs.py). PNG images are compressed by the Pillow Python package.

Requirements

• Python 3.6+
• Markdown 3.3.*
• lxml 4.6.*
• Pillow 8.3.*

Instructions

To build the documentation yourself, follow these steps:

1. Clone this repository
2. Install dependencies: pip install -r requirements.txt
3. Make any changes to the source files in the docs/ directory
4. Run the build script: python3 compile_docs.py

The built documentation will be output to the build/ directory. These files must be checked in to the main Canto repository at pombase/canto before the changes can be shown in PHI-Canto.

Publications

Alayne Cuzick, James Seager, Valerie Wood, Martin Urban, Kim Rutherford, and Kim E. Hammond-Kosack (2023) A framework for community curation of interspecies interaction literature. eLife2023;12:e84658 DOI: https://doi.org/10.7554/eLife.84658