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@PavlidisLab

Pavlidis lab

The Pavlidis Lab at the University of British Columbia

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  1. neuroexpresso neuroexpresso Public

    📊 Gene expression in neuroexpresso database

    R 18 1

  2. Gemma Gemma Public

    Genomics data re-analysis

    Java 23 6

  3. markerGeneProfile markerGeneProfile Public

    Marker gene profile estimation method used in NeuroExpresso manuscript

    R 14 2

Repositories

Showing 10 of 67 repositories
  • TR_singlecell Public

    This repo contains the code for my paper on reproducible TR coexpression patterns using single cell RNA-seq

    PavlidisLab/TR_singlecell’s past year of commit activity
    R 0 MIT 0 0 0 Updated Apr 21, 2025
  • Gemma Public

    Genomics data re-analysis

    PavlidisLab/Gemma’s past year of commit activity
    Java 23 Apache-2.0 6 327 31 Updated Apr 20, 2025
  • GemmaAnalysis Public

    Code used for some analyses of data in Gemma. Probably not of general utility!

    PavlidisLab/GemmaAnalysis’s past year of commit activity
    Java 0 0 0 0 Updated Apr 18, 2025
  • sc-annotation-pipeline Public
    PavlidisLab/sc-annotation-pipeline’s past year of commit activity
    Python 0 0 1 0 Updated Apr 18, 2025
  • GemmaDE Public

    Discover biological conditions associated with differential gene expression by compiling information from >10,000 published experiments

    PavlidisLab/GemmaDE’s past year of commit activity
    R 4 MIT 0 23 0 Updated Apr 17, 2025
  • rnaseq-pipeline Public

    RNA-seq pipeline for raw sequence alignment and transcript/gene quantification.

    PavlidisLab/rnaseq-pipeline’s past year of commit activity
    Shell 24 Unlicense 5 30 1 Updated Apr 16, 2025
  • GemBrow Public

    The Gemma Browser

    PavlidisLab/GemBrow’s past year of commit activity
    Vue 4 Apache-2.0 1 28 1 Updated Apr 16, 2025
  • baseCode Public

    Data structures, math and statistics tools, and utilities that are often needed across projects.

    PavlidisLab/baseCode’s past year of commit activity
    Java 5 Apache-2.0 0 3 2 Updated Apr 13, 2025
  • gemma.R Public

    An R wrapper for the Gemma RESTful API

    PavlidisLab/gemma.R’s past year of commit activity
    R 10 Apache-2.0 1 9 0 Updated Apr 9, 2025
  • aggtools Public
    PavlidisLab/aggtools’s past year of commit activity
    R 0 0 1 0 Updated Apr 4, 2025
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