Myeloid cell states

• Mye.Li2024.csv. Li, W., Pan, L., Hong, W. et al. A single-cell pan-cancer analysis to show the variability of tumor-infiltrating myeloid cells in immune checkpoint blockade. Nat Commun 15, 6142 (2024). https://doi.org/10.1038/s41467-024-50478-8
• DC_signature.Cheng2021.gmx.csv. Cheng S, Li Z, Gao R, Xing B, Gao Y, et al. 2021. A pan-cancer single-cell transcriptional atlas of tumor infiltrating myeloid cells. Cell. 184(3):792-809.e23
• macrophage_signature.Cheng2021.gmx.csv. Cheng S, Li Z, Gao R, Xing B, Gao Y, et al. 2021. A pan-cancer single-cell transcriptional atlas of tumor infiltrating myeloid cells. Cell. 184(3):792-809.e23

T cell states

• T.Chu2023.*.xlsx. Chu, Y. et al. Pan-cancer T cell atlas links a cellular stress response state to immunotherapy resistance. Nat. Med. 29, 1550–1562 (2023).

Breast TME

• BreastCancerAll.Wu2021.csv. Wu, S.Z., Al-Eryani, G., Roden, D.L. et al. A single-cell and spatially resolved atlas of human breast cancers. Nat Genet 53, 1334–1347 (2021). https://doi.org/10.1038/s41588-021-00911-1

How-to

• Files are all directly downloaded from the original supplementary tables.
• avg_log*FC was copyied as avg_strength to facilitate data integration.