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refactor: replace os.path with pathlib in workspace scripts #59

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Merged
Jammy2211 merged 1 commit into from
May 7, 2026
Merged

refactor: replace os.path with pathlib in workspace scripts #59

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Binary file modified dataset/imaging/extra_galaxies/data.fits
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26 changes: 13 additions & 13 deletions dataset/imaging/extra_galaxies/galaxies.json
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Expand Up @@ -11,45 +11,45 @@
"type": "instance",
"class_path": "autogalaxy.profiles.light.standard.sersic.Sersic",
"arguments": {
"sersic_index": 3.0,
"centre": {
"intensity": 1.0,
"ell_comps": {
"type": "tuple",
"values": [
0.0,
0.0
0.05263157894736841,
3.2227547345982974e-18
]
},
"ell_comps": {
"sersic_index": 3.0,
"centre": {
"type": "tuple",
"values": [
0.05263157894736841,
3.2227547345982974e-18
0.0,
0.0
]
},
"intensity": 1.0,
"effective_radius": 0.6
}
},
"disk": {
"type": "instance",
"class_path": "autogalaxy.profiles.light.standard.exponential.Exponential",
"arguments": {
"effective_radius": 1.6,
"centre": {
"type": "tuple",
"values": [
0.0,
0.0
]
},
"intensity": 0.5,
"ell_comps": {
"type": "tuple",
"values": [
0.152828012432548,
0.08823529411764709
]
}
},
"intensity": 0.5,
"effective_radius": 1.6
}
}
}
Expand All @@ -64,14 +64,14 @@
"type": "instance",
"class_path": "autogalaxy.profiles.light.standard.exponential.ExponentialSph",
"arguments": {
"effective_radius": 0.5,
"centre": {
"type": "tuple",
"values": [
1.0,
3.5
]
},
"effective_radius": 0.5,
"intensity": 2.0
}
}
Expand All @@ -87,14 +87,14 @@
"type": "instance",
"class_path": "autogalaxy.profiles.light.standard.exponential.ExponentialSph",
"arguments": {
"effective_radius": 0.8,
"centre": {
"type": "tuple",
"values": [
-2.0,
-3.5
]
},
"effective_radius": 0.8,
"intensity": 2.0
}
}
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Binary file modified dataset/imaging/sersic_x2/data.fits
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8 changes: 4 additions & 4 deletions dataset/imaging/sersic_x2/galaxies.json
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Expand Up @@ -11,7 +11,7 @@
"type": "instance",
"class_path": "autogalaxy.profiles.light.standard.sersic.Sersic",
"arguments": {
"effective_radius": 0.8,
"sersic_index": 2.5,
"centre": {
"type": "tuple",
"values": [
Expand All @@ -20,7 +20,7 @@
]
},
"intensity": 0.1,
"sersic_index": 2.5,
"effective_radius": 0.8,
"ell_comps": {
"type": "tuple",
"values": [
Expand All @@ -42,7 +42,7 @@
"type": "instance",
"class_path": "autogalaxy.profiles.light.standard.sersic.Sersic",
"arguments": {
"effective_radius": 0.6,
"sersic_index": 3.0,
"centre": {
"type": "tuple",
"values": [
Expand All @@ -51,7 +51,7 @@
]
},
"intensity": 0.1,
"sersic_index": 3.0,
"effective_radius": 0.6,
"ell_comps": {
"type": "tuple",
"values": [
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Binary file modified dataset/imaging/simulated_galaxy/data.fits
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32 changes: 16 additions & 16 deletions dataset/interferometer/simple/galaxies.json
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Expand Up @@ -11,8 +11,13 @@
"type": "instance",
"class_path": "autogalaxy.profiles.light.standard.sersic.Sersic",
"arguments": {
"effective_radius": 0.6,
"intensity": 1.0,
"centre": {
"type": "tuple",
"values": [
0.0,
0.0
]
},
"ell_comps": {
"type": "tuple",
"values": [
Expand All @@ -21,33 +26,28 @@
]
},
"sersic_index": 3.0,
"centre": {
"type": "tuple",
"values": [
0.0,
0.0
]
}
"intensity": 1.0,
"effective_radius": 0.6
}
},
"disk": {
"type": "instance",
"class_path": "autogalaxy.profiles.light.standard.exponential.Exponential",
"arguments": {
"intensity": 0.5,
"ell_comps": {
"centre": {
"type": "tuple",
"values": [
0.152828012432548,
0.08823529411764709
0.0,
0.0
]
},
"effective_radius": 1.6,
"centre": {
"intensity": 0.5,
"ell_comps": {
"type": "tuple",
"values": [
0.0,
0.0
0.152828012432548,
0.08823529411764709
]
}
}
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36 changes: 18 additions & 18 deletions dataset/multi/imaging/simple/g_galaxies.json
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Expand Up @@ -5,51 +5,51 @@
"type": "instance",
"class_path": "autogalaxy.galaxy.galaxy.Galaxy",
"arguments": {
"redshift": 0.5,
"label": null,
"redshift": 0.5,
"bulge": {
"type": "instance",
"class_path": "autogalaxy.profiles.light.standard.sersic.Sersic",
"arguments": {
"sersic_index": 3.0,
"ell_comps": {
"type": "tuple",
"values": [
0.05263157894736841,
3.2227547345982974e-18
]
},
"intensity": 0.2,
"effective_radius": 0.6,
"centre": {
"type": "tuple",
"values": [
0.0,
0.0
]
}
},
"ell_comps": {
"type": "tuple",
"values": [
0.05263157894736841,
3.2227547345982974e-18
]
},
"effective_radius": 0.6
}
},
"disk": {
"type": "instance",
"class_path": "autogalaxy.profiles.light.standard.exponential.Exponential",
"arguments": {
"effective_radius": 1.6,
"ell_comps": {
"centre": {
"type": "tuple",
"values": [
0.152828012432548,
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0.0,
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]
},
"intensity": 0.2,
"centre": {
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"type": "tuple",
"values": [
0.0,
0.0
0.152828012432548,
0.08823529411764709
]
}
},
"effective_radius": 1.6
}
}
}
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Binary file modified dataset/multi/imaging/simple/r_data.fits
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36 changes: 18 additions & 18 deletions dataset/multi/imaging/simple/r_galaxies.json
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Expand Up @@ -5,51 +5,51 @@
"type": "instance",
"class_path": "autogalaxy.galaxy.galaxy.Galaxy",
"arguments": {
"redshift": 0.5,
"label": null,
"redshift": 0.5,
"bulge": {
"type": "instance",
"class_path": "autogalaxy.profiles.light.standard.sersic.Sersic",
"arguments": {
"sersic_index": 3.0,
"ell_comps": {
"type": "tuple",
"values": [
0.05263157894736841,
3.2227547345982974e-18
]
},
"intensity": 0.4,
"effective_radius": 0.6,
"centre": {
"type": "tuple",
"values": [
0.0,
0.0
]
}
},
"ell_comps": {
"type": "tuple",
"values": [
0.05263157894736841,
3.2227547345982974e-18
]
},
"effective_radius": 0.6
}
},
"disk": {
"type": "instance",
"class_path": "autogalaxy.profiles.light.standard.exponential.Exponential",
"arguments": {
"effective_radius": 1.6,
"ell_comps": {
"centre": {
"type": "tuple",
"values": [
0.152828012432548,
0.08823529411764709
0.0,
0.0
]
},
"intensity": 0.5,
"centre": {
"ell_comps": {
"type": "tuple",
"values": [
0.0,
0.0
0.152828012432548,
0.08823529411764709
]
}
},
"effective_radius": 1.6
}
}
}
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2 changes: 0 additions & 2 deletions output/.gitignore
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3 changes: 1 addition & 2 deletions scripts/ellipse/database.py
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Expand Up @@ -28,10 +28,9 @@
**Multipoles:** Loading and inspecting multipole model-fit results from the database.
"""

# from autoconf import setup_notebook; setup_notebook()
# from autoconf import setup_notebook; setup_notebook()

import os
from os import path
from pathlib import Path

import autofit as af
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7 changes: 3 additions & 4 deletions scripts/guides/hpc/example_cpu_and_gpu.py
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Expand Up @@ -59,7 +59,6 @@

You will need to update `hpc_username` to your hpc username below.
"""
from os import path
from pathlib import Path

hpc_output_path = Path(path.sep) / "hpc" / "data" / "hpc_username" / "output"
Expand Down Expand Up @@ -205,7 +204,7 @@
"""
dataset_path = Path(hpc_dataset_path, dataset_type, dataset_name)

if not dataset_path.exists():
if not dataset_Path().exists():
local_dataset_path = Path.cwd()
dataset_type = "imaging"
dataset_path = Path(local_dataset_path, "dataset", dataset_type, dataset_name)
Expand Down Expand Up @@ -240,7 +239,7 @@

dataset_path = Path(hpc_dataset_path, dataset_folder, dataset_name)

if not dataset_path.exists():
if not dataset_Path().exists():
local_dataset_path = Path.cwd()
dataset_folder = "imaging"
dataset_path = Path(local_dataset_path, "dataset", dataset_folder, dataset_name)
Expand All @@ -252,7 +251,7 @@
If the dataset does not already exist on your system, it will be created by running the corresponding
simulator script. This ensures that all example scripts can be run without manually simulating data first.
"""
if not dataset_path.exists():
if not dataset_Path().exists():
import subprocess
import sys

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