Merge pull request #3 from RISE-MICCAI/web

Initial commit for the webiste with some data in it.

404.html

@@ -0,0 +1,25 @@
+---
+permalink: /404.html
+layout: default
+---
+
+<style type="text/css" media="screen">
+  .container {
+    margin: 10px auto;
+    max-width: 600px;
+    text-align: center;
+  }
+  h1 {
+    margin: 30px 0;
+    font-size: 4em;
+    line-height: 1;
+    letter-spacing: -1px;
+  }
+</style>
+
+<div class="container">
+  <h1>404</h1>
+
+  <p><strong>Page not found :(</strong></p>
+  <p>The requested page could not be found.</p>
+</div>

Gemfile

@@ -0,0 +1,33 @@
+source "https://rubygems.org"
+# Hello! This is where you manage which Jekyll version is used to run.
+# When you want to use a different version, change it below, save the
+# file and run `bundle install`. Run Jekyll with `bundle exec`, like so:
+#
+#     bundle exec jekyll serve
+#
+# This will help ensure the proper Jekyll version is running.
+# Happy Jekylling!
+gem "jekyll", "~> 4.3.4"
+# This is the default theme for new Jekyll sites. You may change this to anything you like.
+gem "minima", "~> 2.5"
+# If you want to use GitHub Pages, remove the "gem "jekyll"" above and
+# uncomment the line below. To upgrade, run `bundle update github-pages`.
+# gem "github-pages", group: :jekyll_plugins
+# If you have any plugins, put them here!
+group :jekyll_plugins do
+  gem "jekyll-feed", "~> 0.12"
+end
+
+# Windows and JRuby does not include zoneinfo files, so bundle the tzinfo-data gem
+# and associated library.
+platforms :mingw, :x64_mingw, :mswin, :jruby do
+  gem "tzinfo", ">= 1", "< 3"
+  gem "tzinfo-data"
+end
+
+# Performance-booster for watching directories on Windows
+gem "wdm", "~> 0.1", :platforms => [:mingw, :x64_mingw, :mswin]
+
+# Lock `http_parser.rb` gem to `v0.6.x` on JRuby builds since newer versions of the gem
+# do not have a Java counterpart.
+gem "http_parser.rb", "~> 0.6.0", :platforms => [:jruby]

Gemfile.lock

@@ -0,0 +1,113 @@
+GEM
+  remote: https://rubygems.org/
+  specs:
+    addressable (2.8.7)
+      public_suffix (>= 2.0.2, < 7.0)
+    bigdecimal (3.1.9)
+    colorator (1.1.0)
+    concurrent-ruby (1.3.5)
+    em-websocket (0.5.3)
+      eventmachine (>= 0.12.9)
+      http_parser.rb (~> 0)
+    eventmachine (1.2.7)
+    ffi (1.17.1)
+    ffi (1.17.1-arm64-darwin)
+    ffi (1.17.1-x86_64-darwin)
+    forwardable-extended (2.6.0)
+    google-protobuf (4.29.3)
+      bigdecimal
+      rake (>= 13)
+    google-protobuf (4.29.3-arm64-darwin)
+      bigdecimal
+      rake (>= 13)
+    google-protobuf (4.29.3-x86_64-darwin)
+      bigdecimal
+      rake (>= 13)
+    google-protobuf (4.29.3-x86_64-linux)
+      bigdecimal
+      rake (>= 13)
+    http_parser.rb (0.8.0)
+    i18n (1.14.7)
+      concurrent-ruby (~> 1.0)
+    jekyll (4.3.4)
+      addressable (~> 2.4)
+      colorator (~> 1.0)
+      em-websocket (~> 0.5)
+      i18n (~> 1.0)
+      jekyll-sass-converter (>= 2.0, < 4.0)
+      jekyll-watch (~> 2.0)
+      kramdown (~> 2.3, >= 2.3.1)
+      kramdown-parser-gfm (~> 1.0)
+      liquid (~> 4.0)
+      mercenary (>= 0.3.6, < 0.5)
+      pathutil (~> 0.9)
+      rouge (>= 3.0, < 5.0)
+      safe_yaml (~> 1.0)
+      terminal-table (>= 1.8, < 4.0)
+      webrick (~> 1.7)
+    jekyll-feed (0.17.0)
+      jekyll (>= 3.7, < 5.0)
+    jekyll-sass-converter (3.0.0)
+      sass-embedded (~> 1.54)
+    jekyll-seo-tag (2.8.0)
+      jekyll (>= 3.8, < 5.0)
+    jekyll-watch (2.2.1)
+      listen (~> 3.0)
+    kramdown (2.5.1)
+      rexml (>= 3.3.9)
+    kramdown-parser-gfm (1.1.0)
+      kramdown (~> 2.0)
+    liquid (4.0.4)
+    listen (3.9.0)
+      rb-fsevent (~> 0.10, >= 0.10.3)
+      rb-inotify (~> 0.9, >= 0.9.10)
+    mercenary (0.4.0)
+    minima (2.5.2)
+      jekyll (>= 3.5, < 5.0)
+      jekyll-feed (~> 0.9)
+      jekyll-seo-tag (~> 2.1)
+    pathutil (0.16.2)
+      forwardable-extended (~> 2.6)
+    public_suffix (6.0.1)
+    rake (13.2.1)
+    rb-fsevent (0.11.2)
+    rb-inotify (0.11.1)
+      ffi (~> 1.0)
+    rexml (3.4.0)
+    rouge (4.5.1)
+    safe_yaml (1.0.5)
+    sass-embedded (1.83.4)
+      google-protobuf (~> 4.29)
+      rake (>= 13)
+    sass-embedded (1.83.4-aarch64-mingw-ucrt)
+      google-protobuf (~> 4.29)
+    sass-embedded (1.83.4-arm64-darwin)
+      google-protobuf (~> 4.29)
+    sass-embedded (1.83.4-x86_64-cygwin)
+      google-protobuf (~> 4.29)
+    sass-embedded (1.83.4-x86_64-darwin)
+      google-protobuf (~> 4.29)
+    terminal-table (3.0.2)
+      unicode-display_width (>= 1.1.1, < 3)
+    unicode-display_width (2.6.0)
+    webrick (1.9.1)
+
+PLATFORMS
+  aarch64-mingw-ucrt
+  arm64-darwin
+  ruby
+  x86_64-cygwin
+  x86_64-darwin
+  x86_64-linux
+
+DEPENDENCIES
+  http_parser.rb (~> 0.6.0)
+  jekyll (~> 4.3.4)
+  jekyll-feed (~> 0.12)
+  minima (~> 2.5)
+  tzinfo (>= 1, < 3)
+  tzinfo-data
+  wdm (~> 0.1)
+
+BUNDLED WITH
+   2.6.3

_config.yml

@@ -0,0 +1,57 @@
+# Welcome to Jekyll!
+#
+# This config file is meant for settings that affect your whole blog, values
+# which you are expected to set up once and rarely edit after that. If you find
+# yourself editing this file very often, consider using Jekyll's data files
+# feature for the data you need to update frequently.
+#
+# For technical reasons, this file is *NOT* reloaded automatically when you use
+# 'bundle exec jekyll serve'. If you change this file, please restart the server process.
+#
+# If you need help with YAML syntax, here are some quick references for you:
+# https://learn-the-web.algonquindesign.ca/topics/markdown-yaml-cheat-sheet/#yaml
+# https://learnxinyminutes.com/docs/yaml/
+#
+# Site settings
+# These are used to personalize your new site. If you look in the HTML files,
+# you will see them accessed via {{ site.title }}, {{ site.email }}, and so on.
+# You can create any custom variable you would like, and they will be accessible
+# in the templates via {{ site.myvariable }}.
+
+title: RISE-MICCAI
+email: [email protected]
+description: >- # this means to ignore newlines until "baseurl:"
+  Journal Club RISE MICCAI.
+baseurl: "" # the subpath of your site, e.g. /blog
+url: "" # the base hostname & protocol for your site, e.g. http://example.com
+twitter_username: RMiccai
+github_username:  RISE-MICCAI
+
+collections:
+  journal_club:
+    output: true
+
+# Build settings
+theme: minima
+plugins:
+  - jekyll-feed
+
+# Exclude from processing.
+# The following items will not be processed, by default.
+# Any item listed under the `exclude:` key here will be automatically added to
+# the internal "default list".
+#
+# Excluded items can be processed by explicitly listing the directories or
+# their entries' file path in the `include:` list.
+#
+# exclude:
+#   - .sass-cache/
+#   - .jekyll-cache/
+#   - gemfiles/
+#   - Gemfile
+#   - Gemfile.lock
+#   - node_modules/
+#   - vendor/bundle/
+#   - vendor/cache/
+#   - vendor/gems/
+#   - vendor/ruby/

_data/2023.yml

@@ -0,0 +1,101 @@
+- date: "03/06/2023"
+  speaker: "Charles Delahunt"
+  email: "[email protected]"
+  conference: "NeurIPS 2018"
+  paper_title: "Attention Is All You Need"
+  paper_link: "https://arxiv.org/abs/1706.03762"
+  zoom_link: "https://us04web.zoom.us/j/75026944414?pwd=o6zadhV3PlGxnyufn1EUIQE7UEwDxj.1"
+
+- date: "14/06/2023"
+  speaker: "Islem Rekik"
+  email: "[email protected]"
+  conference: "ICLR 2021"
+  paper_title: "HeteroFL: Computation and Communication Efficient Federated Learning for Heterogeneous Clients"
+  paper_link: "https://arxiv.org/pdf/2010.01264.pdf"
+  zoom_link: "https://imperial-ac-uk.zoom.us/j/99487327904?pwd=VUo5Ty91WnM3T0hYT2pOTVhmV2svUT09"
+
+- date: "28/06/2023"
+  speaker: "Samra Irshad"
+  email: "[email protected]"
+  conference: "ECCV 2022"
+  paper_title: "STEEX: Steering Counterfactual Explanations with semantics"
+  paper_link: "https://arxiv.org/pdf/2111.09094.pdf"
+  zoom_link: "https://zoom.us/j/5651952800?pwd=Sm1WWFdnVjI2dWUrQWxHenRZWkZldz09"
+
+- date: "12/07/2023"
+  speaker: "Yasar Mehmood"
+  email: "[email protected]"
+  conference: "CVPR 2023"
+  paper_title: "Geometric Visual Similarity Learning in 3D Medical Image Self-supervised Pre-training"
+  paper_link: "https://arxiv.org/pdf/2303.00874.pdf"
+  zoom_link: "https://meet.google.com/owz-vkkt-fcz"
+
+- date: "26/07/2023"
+  speaker: "Miguel López-Pérez"
+  email: "[email protected]"
+  conference: "NeurIPS 2020"
+  paper_title: "Disentangling Human Error from the Ground Truth in Segmentation of Medical Images"
+  paper_link: "https://arxiv.org/abs/2007.15963"
+  zoom_link: "https://meet.google.com/djx-kzjo-xmi"
+
+- date: "06/09/2023"
+  speaker: "Charles Delahunt"
+  email: "[email protected]"
+  paper_title: "Metrics to guide development of machine learning algorithms for malaria diagnosis: Delahunt, Gachuhi, Horning. 2023"
+  paper_link: "https://arxiv.org/abs/2209.06947"
+  zoom_link: null
+
+- date: "20/09/2023"
+  speaker: "Ayantika Das"
+  email: "[email protected]"
+  conference: "CVPR 2022"
+  paper_title: "Diffusion Autoencoders: Toward a Meaningful and Decodable Representation"
+  paper_link: "https://openaccess.thecvf.com/content/CVPR2022/papers/Preechakul_Diffusion_Autoencoders_Toward_a_Meaningful_and_Decodable_Representation_CVPR_2022_paper.pdf"
+  zoom_link: "https://meet.google.com/aov-oztp-xqk"
+
+- date: "04/10/2023"
+  speaker: "Jeya Maria Jose"
+  email: "[email protected]"
+  conference: "ICML 2021"
+  paper_title: "Learning Transferable Visual Models From Natural Language Supervision"
+  paper_link: "https://arxiv.org/abs/2103.00020"
+  zoom_link: "https://stanford.zoom.us/j/5307552686?pwd=QWFPRU41eGlKSEJ1OTJ0V1RraFRvZz09"
+
+- date: "18/10/2023"
+  speaker: "Soumi Ray"
+  email: "[email protected]"
+  paper_title: "Intensity Population based Unsupervised Hemorrhage Segmentation from Brain CT Images"
+  paper_link: "https://www.sciencedirect.com/science/article/abs/pii/S0957417417308540"
+  zoom_link: null
+
+- date: "01/11/2023"
+  speaker: "Prerak Mody/Mortiz Fuchs"
+  email: "[email protected] / [email protected]"
+  conference: "RSNA 2023"
+  paper_title: "Prediction Variability to Identify Reduced AI Performance in Cancer Diagnosis at MRI and CT"
+  paper_link: "https://doi.org/10.1148/radiol.230275"
+  zoom_link: "https://tu-darmstadt.zoom-x.de/j/6533627440?pwd=emZHWkpORTJHbFRhZXlCSHdTa3hmZz09"
+
+- date: "15/11/2023"
+  speaker: "Tareen Dawood"
+  email: "[email protected]"
+  conference: "MedIA"
+  paper_title: "Uncertainty aware training to improve deep learning model calibration for classification of cardiac MR images"
+  paper_link: "https://www.sciencedirect.com/science/article/pii/S1361841523001214"
+  zoom_link: "https://teams.microsoft.com/l/meetup-join/19%3ameeting_NTgzNjQ2ZmEtNGUyNS00YTE1LWEzNTctOTY2Yjc0YTVjMGVi%40thread.v2/0?context=%7b%22Tid%22%3a%228370cf14-16f3-4c16-b83c-724071654356%22%2c%22Oid%22%3a%22923d2822-52a2-4b77-8367-5d46fb253883%22%7d"
+
+- date: "29/11/2023"
+  speaker: "Prosper Oyibo"
+  email: "[email protected]"
+  conference: "JMI"
+  paper_title: "Two-stage automated diagnosis framework for urogenital schistosomiasis in microscopy images from low-resource settings"
+  paper_link: "https://doi.org/10.1117/1.JMI.10.4.044005"
+  zoom_link: "https://tudelft.zoom.us/j/94685679757"
+
+- date: "13/12/2023"
+  speaker: "Tiarna Lee"
+  email: "[email protected]"
+  conference: "FAIMI (MICCAI) 2023"
+  paper_title: "An investigation into the impact of deep learning model choice on sex and race bias in cardiac MR segmentation"
+  paper_link: "https://arxiv.org/abs/2308.13415"
+  zoom_link: "https://eur03.safelinks.protection.outlook.com/ap/t-59584e83/?url=https%3A%2F%2Fteams.microsoft.com%2Fl%2Fmeetup-join%2F19%253ameeting_OGZmMjI3ZWItNmMyMi00YzRhLWJlYTgtY2ExZWEyYzQ1ZTNm%2540thread.v2%2F0%3Fcontext%3D%257b%2522Tid%2522%253a%25228370cf14-16f3-4c16-b83c-724071654356%2522%252c%2522Oid%2522%253a%25223ec8a995-d966-4a22-bfe5-dd9aa782f662%2522%257d&data=05%7C01%7Cesther.puyol_anton%40kcl.ac.uk%7C927f02bd302049e6d8c608dbf4b2dc30%7C8370cf1416f34c16b83c724071654356%7C0%7C0%7C638372821284630655%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C3000%7C%7C%7C&sdata=%2F7sacsbR7gsdvPUPnpYlIbG5jPmxDgfuraqNog564jc%3D&reserved=0"