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Initial commit for the webiste with some data in it. #3

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Jan 28, 2025
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25 changes: 25 additions & 0 deletions 404.html
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---
permalink: /404.html
layout: default
---

<style type="text/css" media="screen">
.container {
margin: 10px auto;
max-width: 600px;
text-align: center;
}
h1 {
margin: 30px 0;
font-size: 4em;
line-height: 1;
letter-spacing: -1px;
}
</style>

<div class="container">
<h1>404</h1>

<p><strong>Page not found :(</strong></p>
<p>The requested page could not be found.</p>
</div>
33 changes: 33 additions & 0 deletions Gemfile
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source "https://rubygems.org"
# Hello! This is where you manage which Jekyll version is used to run.
# When you want to use a different version, change it below, save the
# file and run `bundle install`. Run Jekyll with `bundle exec`, like so:
#
# bundle exec jekyll serve
#
# This will help ensure the proper Jekyll version is running.
# Happy Jekylling!
gem "jekyll", "~> 4.3.4"
# This is the default theme for new Jekyll sites. You may change this to anything you like.
gem "minima", "~> 2.5"
# If you want to use GitHub Pages, remove the "gem "jekyll"" above and
# uncomment the line below. To upgrade, run `bundle update github-pages`.
# gem "github-pages", group: :jekyll_plugins
# If you have any plugins, put them here!
group :jekyll_plugins do
gem "jekyll-feed", "~> 0.12"
end

# Windows and JRuby does not include zoneinfo files, so bundle the tzinfo-data gem
# and associated library.
platforms :mingw, :x64_mingw, :mswin, :jruby do
gem "tzinfo", ">= 1", "< 3"
gem "tzinfo-data"
end

# Performance-booster for watching directories on Windows
gem "wdm", "~> 0.1", :platforms => [:mingw, :x64_mingw, :mswin]

# Lock `http_parser.rb` gem to `v0.6.x` on JRuby builds since newer versions of the gem
# do not have a Java counterpart.
gem "http_parser.rb", "~> 0.6.0", :platforms => [:jruby]
113 changes: 113 additions & 0 deletions Gemfile.lock
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GEM
remote: https://rubygems.org/
specs:
addressable (2.8.7)
public_suffix (>= 2.0.2, < 7.0)
bigdecimal (3.1.9)
colorator (1.1.0)
concurrent-ruby (1.3.5)
em-websocket (0.5.3)
eventmachine (>= 0.12.9)
http_parser.rb (~> 0)
eventmachine (1.2.7)
ffi (1.17.1)
ffi (1.17.1-arm64-darwin)
ffi (1.17.1-x86_64-darwin)
forwardable-extended (2.6.0)
google-protobuf (4.29.3)
bigdecimal
rake (>= 13)
google-protobuf (4.29.3-arm64-darwin)
bigdecimal
rake (>= 13)
google-protobuf (4.29.3-x86_64-darwin)
bigdecimal
rake (>= 13)
google-protobuf (4.29.3-x86_64-linux)
bigdecimal
rake (>= 13)
http_parser.rb (0.8.0)
i18n (1.14.7)
concurrent-ruby (~> 1.0)
jekyll (4.3.4)
addressable (~> 2.4)
colorator (~> 1.0)
em-websocket (~> 0.5)
i18n (~> 1.0)
jekyll-sass-converter (>= 2.0, < 4.0)
jekyll-watch (~> 2.0)
kramdown (~> 2.3, >= 2.3.1)
kramdown-parser-gfm (~> 1.0)
liquid (~> 4.0)
mercenary (>= 0.3.6, < 0.5)
pathutil (~> 0.9)
rouge (>= 3.0, < 5.0)
safe_yaml (~> 1.0)
terminal-table (>= 1.8, < 4.0)
webrick (~> 1.7)
jekyll-feed (0.17.0)
jekyll (>= 3.7, < 5.0)
jekyll-sass-converter (3.0.0)
sass-embedded (~> 1.54)
jekyll-seo-tag (2.8.0)
jekyll (>= 3.8, < 5.0)
jekyll-watch (2.2.1)
listen (~> 3.0)
kramdown (2.5.1)
rexml (>= 3.3.9)
kramdown-parser-gfm (1.1.0)
kramdown (~> 2.0)
liquid (4.0.4)
listen (3.9.0)
rb-fsevent (~> 0.10, >= 0.10.3)
rb-inotify (~> 0.9, >= 0.9.10)
mercenary (0.4.0)
minima (2.5.2)
jekyll (>= 3.5, < 5.0)
jekyll-feed (~> 0.9)
jekyll-seo-tag (~> 2.1)
pathutil (0.16.2)
forwardable-extended (~> 2.6)
public_suffix (6.0.1)
rake (13.2.1)
rb-fsevent (0.11.2)
rb-inotify (0.11.1)
ffi (~> 1.0)
rexml (3.4.0)
rouge (4.5.1)
safe_yaml (1.0.5)
sass-embedded (1.83.4)
google-protobuf (~> 4.29)
rake (>= 13)
sass-embedded (1.83.4-aarch64-mingw-ucrt)
google-protobuf (~> 4.29)
sass-embedded (1.83.4-arm64-darwin)
google-protobuf (~> 4.29)
sass-embedded (1.83.4-x86_64-cygwin)
google-protobuf (~> 4.29)
sass-embedded (1.83.4-x86_64-darwin)
google-protobuf (~> 4.29)
terminal-table (3.0.2)
unicode-display_width (>= 1.1.1, < 3)
unicode-display_width (2.6.0)
webrick (1.9.1)

PLATFORMS
aarch64-mingw-ucrt
arm64-darwin
ruby
x86_64-cygwin
x86_64-darwin
x86_64-linux

DEPENDENCIES
http_parser.rb (~> 0.6.0)
jekyll (~> 4.3.4)
jekyll-feed (~> 0.12)
minima (~> 2.5)
tzinfo (>= 1, < 3)
tzinfo-data
wdm (~> 0.1)

BUNDLED WITH
2.6.3
57 changes: 57 additions & 0 deletions _config.yml
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# Welcome to Jekyll!
#
# This config file is meant for settings that affect your whole blog, values
# which you are expected to set up once and rarely edit after that. If you find
# yourself editing this file very often, consider using Jekyll's data files
# feature for the data you need to update frequently.
#
# For technical reasons, this file is *NOT* reloaded automatically when you use
# 'bundle exec jekyll serve'. If you change this file, please restart the server process.
#
# If you need help with YAML syntax, here are some quick references for you:
# https://learn-the-web.algonquindesign.ca/topics/markdown-yaml-cheat-sheet/#yaml
# https://learnxinyminutes.com/docs/yaml/
#
# Site settings
# These are used to personalize your new site. If you look in the HTML files,
# you will see them accessed via {{ site.title }}, {{ site.email }}, and so on.
# You can create any custom variable you would like, and they will be accessible
# in the templates via {{ site.myvariable }}.

title: RISE-MICCAI
email: [email protected]
description: >- # this means to ignore newlines until "baseurl:"
Journal Club RISE MICCAI.
baseurl: "" # the subpath of your site, e.g. /blog
url: "" # the base hostname & protocol for your site, e.g. http://example.com
twitter_username: RMiccai
github_username: RISE-MICCAI

collections:
journal_club:
output: true

# Build settings
theme: minima
plugins:
- jekyll-feed

# Exclude from processing.
# The following items will not be processed, by default.
# Any item listed under the `exclude:` key here will be automatically added to
# the internal "default list".
#
# Excluded items can be processed by explicitly listing the directories or
# their entries' file path in the `include:` list.
#
# exclude:
# - .sass-cache/
# - .jekyll-cache/
# - gemfiles/
# - Gemfile
# - Gemfile.lock
# - node_modules/
# - vendor/bundle/
# - vendor/cache/
# - vendor/gems/
# - vendor/ruby/
101 changes: 101 additions & 0 deletions _data/2023.yml
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@@ -0,0 +1,101 @@
- date: "03/06/2023"
speaker: "Charles Delahunt"
email: "[email protected]"
conference: "NeurIPS 2018"
paper_title: "Attention Is All You Need"
paper_link: "https://arxiv.org/abs/1706.03762"
zoom_link: "https://us04web.zoom.us/j/75026944414?pwd=o6zadhV3PlGxnyufn1EUIQE7UEwDxj.1"

- date: "14/06/2023"
speaker: "Islem Rekik"
email: "[email protected]"
conference: "ICLR 2021"
paper_title: "HeteroFL: Computation and Communication Efficient Federated Learning for Heterogeneous Clients"
paper_link: "https://arxiv.org/pdf/2010.01264.pdf"
zoom_link: "https://imperial-ac-uk.zoom.us/j/99487327904?pwd=VUo5Ty91WnM3T0hYT2pOTVhmV2svUT09"

- date: "28/06/2023"
speaker: "Samra Irshad"
email: "[email protected]"
conference: "ECCV 2022"
paper_title: "STEEX: Steering Counterfactual Explanations with semantics"
paper_link: "https://arxiv.org/pdf/2111.09094.pdf"
zoom_link: "https://zoom.us/j/5651952800?pwd=Sm1WWFdnVjI2dWUrQWxHenRZWkZldz09"

- date: "12/07/2023"
speaker: "Yasar Mehmood"
email: "[email protected]"
conference: "CVPR 2023"
paper_title: "Geometric Visual Similarity Learning in 3D Medical Image Self-supervised Pre-training"
paper_link: "https://arxiv.org/pdf/2303.00874.pdf"
zoom_link: "https://meet.google.com/owz-vkkt-fcz"

- date: "26/07/2023"
speaker: "Miguel López-Pérez"
email: "[email protected]"
conference: "NeurIPS 2020"
paper_title: "Disentangling Human Error from the Ground Truth in Segmentation of Medical Images"
paper_link: "https://arxiv.org/abs/2007.15963"
zoom_link: "https://meet.google.com/djx-kzjo-xmi"

- date: "06/09/2023"
speaker: "Charles Delahunt"
email: "[email protected]"
paper_title: "Metrics to guide development of machine learning algorithms for malaria diagnosis: Delahunt, Gachuhi, Horning. 2023"
paper_link: "https://arxiv.org/abs/2209.06947"
zoom_link: null

- date: "20/09/2023"
speaker: "Ayantika Das"
email: "[email protected]"
conference: "CVPR 2022"
paper_title: "Diffusion Autoencoders: Toward a Meaningful and Decodable Representation"
paper_link: "https://openaccess.thecvf.com/content/CVPR2022/papers/Preechakul_Diffusion_Autoencoders_Toward_a_Meaningful_and_Decodable_Representation_CVPR_2022_paper.pdf"
zoom_link: "https://meet.google.com/aov-oztp-xqk"

- date: "04/10/2023"
speaker: "Jeya Maria Jose"
email: "[email protected]"
conference: "ICML 2021"
paper_title: "Learning Transferable Visual Models From Natural Language Supervision"
paper_link: "https://arxiv.org/abs/2103.00020"
zoom_link: "https://stanford.zoom.us/j/5307552686?pwd=QWFPRU41eGlKSEJ1OTJ0V1RraFRvZz09"

- date: "18/10/2023"
speaker: "Soumi Ray"
email: "[email protected]"
paper_title: "Intensity Population based Unsupervised Hemorrhage Segmentation from Brain CT Images"
paper_link: "https://www.sciencedirect.com/science/article/abs/pii/S0957417417308540"
zoom_link: null

- date: "01/11/2023"
speaker: "Prerak Mody/Mortiz Fuchs"
email: "[email protected] / [email protected]"
conference: "RSNA 2023"
paper_title: "Prediction Variability to Identify Reduced AI Performance in Cancer Diagnosis at MRI and CT"
paper_link: "https://doi.org/10.1148/radiol.230275"
zoom_link: "https://tu-darmstadt.zoom-x.de/j/6533627440?pwd=emZHWkpORTJHbFRhZXlCSHdTa3hmZz09"

- date: "15/11/2023"
speaker: "Tareen Dawood"
email: "[email protected]"
conference: "MedIA"
paper_title: "Uncertainty aware training to improve deep learning model calibration for classification of cardiac MR images"
paper_link: "https://www.sciencedirect.com/science/article/pii/S1361841523001214"
zoom_link: "https://teams.microsoft.com/l/meetup-join/19%3ameeting_NTgzNjQ2ZmEtNGUyNS00YTE1LWEzNTctOTY2Yjc0YTVjMGVi%40thread.v2/0?context=%7b%22Tid%22%3a%228370cf14-16f3-4c16-b83c-724071654356%22%2c%22Oid%22%3a%22923d2822-52a2-4b77-8367-5d46fb253883%22%7d"

- date: "29/11/2023"
speaker: "Prosper Oyibo"
email: "[email protected]"
conference: "JMI"
paper_title: "Two-stage automated diagnosis framework for urogenital schistosomiasis in microscopy images from low-resource settings"
paper_link: "https://doi.org/10.1117/1.JMI.10.4.044005"
zoom_link: "https://tudelft.zoom.us/j/94685679757"

- date: "13/12/2023"
speaker: "Tiarna Lee"
email: "[email protected]"
conference: "FAIMI (MICCAI) 2023"
paper_title: "An investigation into the impact of deep learning model choice on sex and race bias in cardiac MR segmentation"
paper_link: "https://arxiv.org/abs/2308.13415"
zoom_link: "https://eur03.safelinks.protection.outlook.com/ap/t-59584e83/?url=https%3A%2F%2Fteams.microsoft.com%2Fl%2Fmeetup-join%2F19%253ameeting_OGZmMjI3ZWItNmMyMi00YzRhLWJlYTgtY2ExZWEyYzQ1ZTNm%2540thread.v2%2F0%3Fcontext%3D%257b%2522Tid%2522%253a%25228370cf14-16f3-4c16-b83c-724071654356%2522%252c%2522Oid%2522%253a%25223ec8a995-d966-4a22-bfe5-dd9aa782f662%2522%257d&data=05%7C01%7Cesther.puyol_anton%40kcl.ac.uk%7C927f02bd302049e6d8c608dbf4b2dc30%7C8370cf1416f34c16b83c724071654356%7C0%7C0%7C638372821284630655%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C3000%7C%7C%7C&sdata=%2F7sacsbR7gsdvPUPnpYlIbG5jPmxDgfuraqNog564jc%3D&reserved=0"
Empty file added _data/2024.yml
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