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Issues list

Update Drug Central to the latest release (Nov. 1, 2023) enhancement New feature or request
#440 opened Apr 4, 2025 by saramsey
upgrade ChEMBL to Chembl release 35 for the next KG2pre build enhancement New feature or request
#439 opened Apr 4, 2025 by saramsey
do not map any SemMedDB-derived edges to biolink:subclass_of bug Something isn't working verify this fix in next kg2 build
#438 opened Apr 3, 2025 by saramsey
@saramsey
1
many qualifiers in predicate-remap.yaml are missing object_aspect or object_direction bug Something isn't working
#437 opened Mar 25, 2025 by saramsey
@saramsey
1
check if KG2pre is using the correct CURIE prefixes
#435 opened Feb 27, 2025 by saramsey
@sundareswarpullela
change predicate for DisGeNet bug Something isn't working
#434 opened Feb 20, 2025 by saramsey
@bazarkua
5
remove requirements-kg2-build.txt entries that are no longer needed now that ontobio is removed verify this fix in next kg2 build
#433 opened Feb 20, 2025 by saramsey
@saramsey @bazarkua
1
Check for incorrect CURIE prefixes in KG2pre build system
#432 opened Feb 5, 2025 by saramsey
5
Build KG2.10.2pre
#431 opened Feb 5, 2025 by saramsey
@bazarkua @sundareswarpullela
6
update to Clinical Trials KP TSV file format has broken clinicaltrialskg_tsv_to_kg_jsonl.py verify this fix in next kg2 build
#430 opened Feb 5, 2025 by saramsey
1
Look into ingest of PANTHER into RTX-KG2pre
#429 opened Jan 27, 2025 by saramsey
Look into ingest of RHEA into RTX-KG2
#428 opened Jan 27, 2025 by saramsey
KG2pre build instance setup script should install jq by default housekeeping verify this fix in next kg2 build
#421 opened Nov 13, 2024 by saramsey
CTKP Castleman treats edge not returned from KG2.10.1 bug Something isn't working
#419 opened Nov 8, 2024 by amykglen
18
Clinical Trials KP edge predicates are malformed - double 'biolink' prefix - e.g., "biolink:biolink_treats" bug Something isn't working high priority verify this fix in next kg2 build
#416 opened Oct 5, 2024 by amykglen
@saramsey
1
Wrong infores curie used on Clinical Trials KP edges (infores:biothings-multiomics-clinicaltrials) bug Something isn't working high priority verify this fix in next kg2 build
#414 opened Oct 3, 2024 by amykglen
2
Node Normalization of conflation for T1D
#410 opened Sep 4, 2024 by jaredroach
Pull File from S3 Bucket when cURL Fails caution tricky
#409 opened Sep 2, 2024 by ecwood
@ecwood
PathWhiz?
#407 opened Aug 13, 2024 by cbizon
3
KL/AT Updates
#406 opened Aug 8, 2024 by ecwood
Handling Mondo's disease_responds_to edges
#403 opened Jul 30, 2024 by ecwood
drug_regulatory_status_world_wide is not a valid predicate bug Something isn't working
#402 opened Jul 18, 2024 by amykglen
3
Should we ETL "SMILE" information for small molecule compounds, into KG2pre? question Further information is requested
#401 opened Jul 17, 2024 by saramsey
3
Code Cleanup housekeeping
#399 opened Jul 16, 2024 by ecwood
@saramsey
3
Should edge_id's use the core_predicate when there is no qualified_predicate? question Further information is requested sar-look Marks an issue that Steve needs to examine
#397 opened Jul 10, 2024 by ecwood
ProTip! no:milestone will show everything without a milestone.