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Add Dockerfile and requirements.txt#45

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z3rone merged 59 commits intomasterRappsilber-Laboratory/xiRT:masterfrom fschimweg-dockerRappsilber-Laboratory/xiRT:fschimweg-dockerCopy head branch name to clipboardFeb 25, 2025

+974-268

Commits

Commits on Aug 10, 2023

• Fix decprecated package

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Commits on Aug 11, 2023

• Replace CuDNNGRU and CuDNNLSTM

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• Fix layer type

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• Remove tf addons

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• Migration work

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• Migration work

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• Migration work

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• Add working requirements

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Commits on Aug 15, 2023

• Fix axis plotting

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Commits on Aug 17, 2023

• Clean up debugging

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• Add specific versions

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• Parameterize column names

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Commits on Sep 1, 2023

• Change xirt_runner function API to remove file paths

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• Fix snakemake mode

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• Return data to API

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Commits on Feb 13, 2024

• Make imports relative and add parquet support

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• Fix relative modules

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• Fix logger

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• Fix logger

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• Fix logger

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• Add multiprocessing

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• Rename link position column

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• Rename link position column

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• Write to parquet

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Commits on Mar 10, 2024

• Use multiprocess to prepare sequences

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• Use multiprocess to prepare sequences

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• Use f strings

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• Fix lost slice

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Commits on Nov 29, 2024

• Fix key error

  

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• Improve modify_cl_residues

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• Use async_apply

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Commits on Nov 30, 2024

• ValueError expanding sequences

  

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• Fix typing

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• Fix shape mismatch

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• Add requirement

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• Temp change to csv

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Commits on Dec 1, 2024

• Fix double DF view

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• Fix naming

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Commits on Dec 2, 2024

• Allow underscore cols

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Commits on Dec 3, 2024

• Fix version printing

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• Fix version printing

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• Fix version printing

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• Fix indexing

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Commits on Feb 24, 2025

• Working docker version

  

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• Fix Pipfile

  

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• Add slim

  

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• Get v1.2.2 running

  

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• Fix requirements.txt

  

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• Docker build working

  

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Commits on Feb 25, 2025

• Merge branch 'fschimweg_dev' into fschimweg-docker

  

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• Get tests running

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• Formatting

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• Formatting

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• Formatting

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• Migrate to python 3.9

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• Install curl

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• Install more curl

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• Migrate templates

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• Use PyPi for xiutilities

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