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Originally set as None, however this is incorrect and leads to other issues. The default should be an empty numpy array, as it is later filled in QMTP with a numpy array with x, y, and z coordinates.

Setting it as `None` led to other problems. It will be set
to an empty array as default, and as a filled array with
3 values (x, y, and z coordinates) when determined.
@rwest rwest merged commit 2eabd95 into ReactionMechanismGenerator:master Mar 28, 2014
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rwest commented Mar 28, 2014

Seems to fix the unit test errors.
In the long run we may worry about the memory cost of storing this unnecessary empty array on every single atom, but for now at least this works.

@pierrelb pierrelb deleted the atomCoords branch April 29, 2015 17:36
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2 participants