Merge pull request galaxyproject#4166 from ResearchObject/ro-crate

Add FAIR data and RO-Crate module

CONTRIBUTORS.yaml

@@ -1258,6 +1258,11 @@ pravs3683:
     email: [email protected]
     joined: 2019-04
 
+ptsefton:
+    name: Peter Sefton
+    orcid: 0000-0002-3545-944X
+    joined: 2023-04
+
 pvanheus:
     name: Peter van Heusden
     twitter: pvanheus
@@ -1414,9 +1419,16 @@ sophia120199:
 
 stain:
     name: Stian Soiland-Reyes
-    joined: 2023-04
+    email: [email protected]
+    twitter: soilandreyes
     orcid: 0000-0001-9842-9718
+    joined: 2023-04
     elixir_node: uk
+    location:
+        country: UK
+        lat: 53.46724379071192 
+        lon: -2.233631283105614
+    fediverse: https://scholar.social/@soilandreyes
 
 stephanierobin:
     name: Stéphanie Robin

_includes/default-footer.html

@@ -21,11 +21,11 @@
 				</p>
 				{% endif %}
 				<p>
-					{% if page.layout == "tutorial_hands_on" %}
-						This material licensed under
-					{% else %}
-						Materials licensed under
+					<i>This Material</i>:
+					{% if page.copyright %}
+						is {{ page.copyright }}.
 					{% endif %}
+					It is licensed under
 					<a rel="license" href="https://spdx.org/licenses/{% if page.license %}{{ page.license }}{% else %}CC-BY-4.0{% endif %}">
 						{% if page.license %}{{ page.license }}{% else %}Creative Commons Attribution 4.0 International License{% endif %}
 					</a>

_layouts/tutorial_hands_on.html

@@ -160,6 +160,9 @@ <h4 class="alert-heading">Under Development!</h4>
 
         <div><strong>{% icon last_modification aria=false %} {{ locale['last-modification'] | default: "Last modification" }}:</strong> {{ page | last_modified_at | date: "%b %-d, %Y"}} </div>
         <div><strong>{% icon license aria=false %} {{ locale['license'] | default: "License" }}:</strong>
+		{% if page.copyright %}
+		{{ page.copyright }}.
+		{% endif %}
             {% if page.license %}
 	    Tutorial Content is licensed under <a rel="license" href="https://spdx.org/licenses/{{ page.license }}">{{ page.license }}</a>.
             {% else %}

bin/schema-tutorial.yaml

@@ -402,12 +402,19 @@ mapping:
                       type: str
                       description: |
                         URL of the external resource
+    copyright:
+        type: str
+        description: |
+          A copyright attribution string, as required by some licenses.
+        examples:
+            - © Copyright 2021-2023 University of Technology Sydney, The University of Manchester UK and RO-Crate contributors
     license:
         type: str
         description: |
             An [SPDX](https://spdx.org/) identifier for the alternative license that is used for that particular material. This is **only** relevant for materials which have been imported from an external source and were originally licensed under another license. For new materials we strongly encourage contributors to not use this key as materials are CC-BY, by default.
         examples:
             - MIT
+            - Apache-2.0
     draft:
         type: bool
         description: |

topics/fair/tutorials/ro-crate-intro/rainfall-1.2.1/data.csv

@@ -0,0 +1,3 @@
+"Date","Minimum temperature (°C)","Maximum temperature (°C)","Rainfall (mm)"
+2022-02-01,16.0,28.4,0.6
+2022-02-02,16.3,17.2,12.4

topics/fair/tutorials/ro-crate-intro/rainfall-1.2.1/index.html

@@ -0,0 +1 @@
+ro-crate-preview.html

topics/fair/tutorials/ro-crate-intro/rainfall-1.2.1/ro-crate-metadata.json

@@ -0,0 +1,76 @@
+{
+  "@context": "https://w3id.org/ro/crate/1.1/context",
+  "@graph": [
+    {
+      "@id": "ro-crate-metadata.json",
+      "@type": "CreativeWork",
+      "conformsTo": {
+        "@id": "https://w3id.org/ro/crate/1.1"
+      },
+      "about": {
+        "@id": "./"
+      }
+    },
+    {
+      "@id": "./",
+      "@type": [
+        "Dataset",
+        "LearningResource"
+      ],
+      "hasPart": [
+        {
+          "@id": "data.csv"
+        }
+      ],
+      "name": "Example dataset for RO-Crate specification",
+      "description": "Official rainfall readings for Katoomba, NSW 2022, Australia",
+      "datePublished": "2023-05-22T12:03:00+0100",
+      "license": {
+        "@id": "http://spdx.org/licenses/CC0-1.0"
+      },
+      "author": {
+        "@id": "https://orcid.org/0000-0002-1825-0097"
+      },
+      "publisher": {
+        "@id": "https://ror.org/05gq02987"
+      }
+    },
+    {
+      "@id": "data.csv",
+      "@type": "File",
+      "name": "Rainfall Katoomba 2022-02",
+      "description": "Rainfall data for Katoomba, NSW Australia February 2022",
+      "encodingFormat": "text/csv",
+      "license": {
+        "@id": "https://creativecommons.org/licenses/by-nc-sa/4.0/"
+      }
+    },
+    {
+      "@id": "https://creativecommons.org/licenses/by-nc-sa/4.0/",
+      "@type": "CreativeWork",
+      "name": "CC BY-NC-SA 4.0 International",
+      "description": "Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International"
+    },
+    {
+      "@id": "http://spdx.org/licenses/CC0-1.0",
+      "@type": "CreativeWork",
+      "name": "CC0-1.0",
+      "description": "Creative Commons Zero v1.0 Universal",
+      "url": "https://creativecommons.org/publicdomain/zero/1.0/"
+    },
+    {
+      "@id": "https://orcid.org/0000-0002-1825-0097",
+      "@type": "Person",
+      "name": "Josiah Carberry",
+      "affiliation": {
+        "@id": "https://ror.org/05gq02987"
+      }
+    },
+    {
+      "@id": "https://ror.org/05gq02987",
+      "@type": "Organization",
+      "name": "Brown University",
+      "url": "http://www.brown.edu/"
+    }
+  ]
+}