Merge pull request galaxyproject#4158 from fubar2/tfdocker

Updates to both ToolFactory topics to fix broken installation instructions.
ResearchObject · May 21, 2023 · e90ee43 · e90ee43
2 parents fdf710d + 0d0963c
commit e90ee43
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Showing 7 changed files with 322 additions and 457 deletions.
diff --git a/.github/workflows/ci-main.yml b/.github/workflows/ci-main.yml
@@ -68,3 +68,4 @@ jobs:
         with:
           rubocop_version: gemfile
           reporter: github-pr-review
+          fail_on_error: true
diff --git a/bin/validate-frontmatter.rb b/bin/validate-frontmatter.rb
@@ -223,7 +223,13 @@ def self.lint_quiz_file(fn)
   def self.run
     errors = []
     # Topics
-    materials = Dir.glob('./topics/**/metadata.*')
+    materials = (Dir.glob('./metadata/*.yaml') + Dir.glob('./metadata/*.yml'))
+                .grep_v(/schema-*/)
+                .select do |x|
+      d = YAML.load_file(x)
+      d.key? 'maintainers' or d.key? 'summary' or d.key? 'type'
+    end
+
     errors += materials.map { |x| [x, lint_topic(x)] }
 
     # Lint tutorials/slides/metadata

diff --git a/metadata/one-health.yaml b/metadata/one-health.yaml
@@ -10,5 +10,5 @@ tag_based: true
 maintainers:
   - wm75
   - pvanheus
-  - tklingstrom
+  - TKlingstrom
   - hexylena
diff --git a/news/_posts/2023-05-15-isoform-usage-training.md b/news/_posts/2023-05-15-isoform-usage-training.md
@@ -7,7 +7,7 @@ contributions:
 cover: news/images/isoform_usage_post.jpg
 coveralt: "Schematic of an isoform switch and detection pipeline. Data is annotated and a prediction is made for isoform switch consequences"
 tags: [new tutorial]
-tutorial: topics/transcriptomics/tutorials/differential-isoform-expression/tutorial.md
+tutorial: topics/transcriptomics/tutorials/differential-isoform-expression/tutorial.html
 ---
 
 The GTN hosts a new training for analyzing alternative splicing at genome-wide scale!

diff --git a/topics/dev/images/ToolFactory_big_picture.png b/topics/dev/images/ToolFactory_big_picture.png
diff --git a/topics/dev/tutorials/tool-generators-advanced/tutorial.md b/topics/dev/tutorials/tool-generators-advanced/tutorial.md
diff --git a/topics/dev/tutorials/tool-generators/tutorial.md b/topics/dev/tutorials/tool-generators/tutorial.md