Structural and Functional Genomics Laboratory
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ConsensuSV-pipeline
ConsensuSV-pipeline PublicAutomatised pipeline of ConsensuSV workflow.
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Repositories
- 3dgnome-ng Public
Highly experimental playground version of 3D-GNOME derived from original paper and source code
SFGLab/3dgnome-ng’s past year of commit activity - pyLoopSage Public
Updated version of the stochastic loop extrusion model: LoopSage with capability to run incredibly fast, parallelized across CPU cores. This package is even more user-friendly and it can be installed via PyPI.
SFGLab/pyLoopSage’s past year of commit activity - tbooo Public
The Biobank Of Our Own - scripts that recreate access patterns of UK Biobank using data from 1000 Genomes and Simons Genome Diversity Project
SFGLab/tbooo’s past year of commit activity - enhancer3D Public
A database of 3D chromatin model ensembles and enhancer-promoter distance profiles for archaic (Neanderthal, Denisovan) and modern human genomes (GM12878, H1-ESC, HFFc6)
SFGLab/enhancer3D’s past year of commit activity - RepliSage Public
A software that simulates the dynamics of DNA replication by following a sofisticated Hamiltonian Monte Carlo approach.
SFGLab/RepliSage’s past year of commit activity - dcHiChIP Public
dcHiChIP is Nextflow pipeline for analysis of HiChIP data. It supports loop detection, peak calling, TADs, compartments, stripes, motif analysis, and 3D chromatin modeling.
SFGLab/dcHiChIP’s past year of commit activity
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