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@SahakyanLab

SahakyanLab

Integrative Computational Biology and Machine Learning Laboratory, University of Oxford

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  1. ROptimus ROptimus Public

    ROptimus: a parallel general purpose adaptive optimisation engine

    R 4

  2. GenomicContactDynamics GenomicContactDynamics Public

    Code for the analyses and simulations involved in the Genomic Contact Dynamics research.

    R 1 1

  3. kmeRtone kmeRtone Public

    Multi-purpose and transferrable k-meric enrichment/depletion analysis software.

    R 1

  4. DNAfrAIlib DNAfrAIlib Public

    DNA fragility associated k-meric features for genomic sequence-driven machine learning.

    R 1

  5. GenomicPR2SimsWebApp GenomicPR2SimsWebApp Public

    Shiny interface and simple ODE-based simulation code for the genomic base composition.

    R

  6. GenomicPR2Simulations GenomicPR2Simulations Public

    Pipeline for ODE-driven simulations to explore the genomic compliance of PR-2.

    Mathematica

Repositories

Showing 10 of 13 repositories
  • kmeRtone Public

    Multi-purpose and transferrable k-meric enrichment/depletion analysis software.

    R 1 GPL-3.0 0 0 0 Updated Apr 14, 2025
  • GenomeAssembler_dev Public

    Code to simulate the generation of sequencing reads, to de novo assemble a genome, and to calculate breakage propensity scores.

    R 0 GPL-3.0 0 0 0 Updated Mar 22, 2025
  • GenomicContactDynamics Public

    Code for the analyses and simulations involved in the Genomic Contact Dynamics research.

    R 1 1 0 0 Updated Feb 26, 2025
  • iMotif_dev Public

    Data and scripts for iMotif stability predictions in a restricted C/T space of possible sequences.

    R 0 GPL-3.0 0 0 0 Updated Sep 13, 2024
  • DNAkmerQM Public

    A database of electronic, topological, and QM-derived features calculated for DNA k-mers.

    0 CC-BY-4.0 0 0 0 Updated Jun 27, 2024
  • NucleicAcidsQM Public

    Research and development code for QM calculations on nucleic acids.

    R 0 GPL-3.0 0 0 0 Updated Mar 24, 2024
  • DNAFragility_dev Public

    Research and development code for DNA breakpoints induced under various conditions.

    R 0 GPL-3.0 0 0 0 Updated Mar 6, 2024
  • DNAFragility_ML Public

    Development and application of DNA fragility prediction engine based only on sequence-context.

    R 0 GPL-3.0 0 0 0 Updated Mar 5, 2024
  • DNAfrAIlib Public

    DNA fragility associated k-meric features for genomic sequence-driven machine learning.

    R 1 GPL-3.0 0 0 0 Updated Feb 21, 2024
  • GenomicPR2Simulations Public

    Pipeline for ODE-driven simulations to explore the genomic compliance of PR-2.

    Mathematica 0 GPL-3.0 0 0 0 Updated Jun 9, 2023
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