This repository contains my scripts and workflows associated with WGS, RNASeq, Chipseq, ATACseq, Single-cell RNASeq, and multiomics data analysis workflows.
- RNASeq_readAlign_workflow.sh - Slurm HPC Hisat2, Samtools, featurecounts based Human RNASeq read alignment workflow
- TCGA_workflow.R - TCGAWorkflow based automnation of gene and miRNA differential expression, methylation, and gene-miRNA correlation analysis to find key biomarkers in BRCA cancer subtypes.
- MACS2 based Chipseq workflow - To be added
- Broad Institute Cancer Single-cell RNAseq data analysis workflow. - To be added