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ENH: Adapt cerebparc segmentation script for fastigial Hausdorff loss#37

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AdaptForFastigialOnly
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ENH: Adapt cerebparc segmentation script for fastigial Hausdorff loss#37
jhlegarreta wants to merge 1 commit intomainfrom
AdaptForFastigialOnly

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Adapt cerebparc segmentation script for fastigial nuclei segmentation using Hausdorff loss.

Adapt cerebparc segmentation script for fastigial nuclei segmentation
using Hausdorff loss.
@jhlegarreta jhlegarreta force-pushed the AdaptForFastigialOnly branch from 6cfc65b to 20b9717 Compare April 27, 2024 22:46
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A few notes:

  • Dice is 0 after 300 epochs (after having varied the learning rate to larger values e.g. 1e-3 since at epoch 200 it was at 0). So nothing is learned, as opposed to PR ENH: Check cerebseg script using Hausdorff loss #38. Not sure if changing the value of the alpha parameter would make a difference.
    Note: remember that I trained with No-QC'ed b100-b2000-b3000. So Ids are different. Need to re-run anyways with all 100 subs.
  • So last option is to warm-start with Dice and use try scheduler.

outputs

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