Skip to content

BUG: Remove non-existing version keyword parameter in script argparser #173

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Merged
ljod merged 1 commit into from
Oct 19, 2023
Merged

BUG: Remove non-existing version keyword parameter in script argparser #173

Show file tree
Hide file tree
Changes from all commits
Commits
Show all changes
1 commit
Select commit
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
3 changes: 1 addition & 2 deletions bin/wm_compare_vtks.py
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -15,8 +15,7 @@ def _build_arg_parser():

parser = argparse.ArgumentParser(
description="Compare two tractography files to see how much registration has changed the points. The files must have the exact same size and lines and points, e.g. the original file and the file that results from applying a transform to a file.",
epilog="Written by Lauren O\'Donnell, [email protected]. Please reference \"O'Donnell, Lauren J., and C-F. Westin. Automatic tractography segmentation using a high-dimensional white matter atlas. Medical Imaging, IEEE Transactions on 26.11 (2007): 1562-1575.\"",
version='1.0')
epilog="Written by Lauren O\'Donnell, [email protected]. Please reference \"O'Donnell, Lauren J., and C-F. Westin. Automatic tractography segmentation using a high-dimensional white matter atlas. Medical Imaging, IEEE Transactions on 26.1 (2007): 1562-1575.\"")
parser.add_argument(
'inputFile1',
help='A file of whole-brain tractography as vtkPolyData (.vtk or .vtp).')
Expand Down
3 changes: 1 addition & 2 deletions utilities/wm_flatten_length_distribution.py
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -16,8 +16,7 @@ def _build_arg_parser():

parser = argparse.ArgumentParser(
description="Samples fibers such that the output distribution of fiber lengths is approximately flat, within the input length range.",
epilog="Written by Lauren O\'Donnell, [email protected]",
version='1.0')
epilog="Written by Lauren O\'Donnell, [email protected]")
parser.add_argument(
'inputDirectory',
help='Contains whole-brain tractography as vtkPolyData file(s).')
Expand Down
3 changes: 1 addition & 2 deletions utilities/wm_statistics.py
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -16,8 +16,7 @@ def _build_arg_parser():

parser = argparse.ArgumentParser(
description="Compute requested statistics comparing groups in the input groups file. Please verify your input by running wm_quality_control_cluster measurements before running this program.",
epilog="Written by Lauren O\'Donnell, [email protected]. Please reference \"O'Donnell, Lauren J., and C-F. Westin. Automatic tractography segmentation using a high-dimensional white matter atlas. Medical Imaging, IEEE Transactions on 26.11 (2007): 1562-1575.\"",
version='1.0')
epilog="Written by Lauren O\'Donnell, [email protected]. Please reference \"O'Donnell, Lauren J., and C-F. Westin. Automatic tractography segmentation using a high-dimensional white matter atlas. Medical Imaging, IEEE Transactions on 26.11 (2007): 1562-1575.\"")
parser.add_argument(
'inputDirectory',
help='A directory of .csv or txt measurement files from Slicer tractography measurements.')
Expand Down
3 changes: 1 addition & 2 deletions utilities/wm_statistics_export_data.py
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -13,8 +13,7 @@ def _build_arg_parser():

parser = argparse.ArgumentParser(
description="Export all subjects selected measures into one excel-readable file for use in statistics programs. Please verify your input by running wm_quality_control_cluster measurements before running this program.",
epilog="Written by Lauren O\'Donnell, [email protected]. Please reference \"O'Donnell, Lauren J., and C-F. Westin. Automatic tractography segmentation using a high-dimensional white matter atlas. Medical Imaging, IEEE Transactions on 26.11 (2007): 1562-1575.\"",
version='1.0')
epilog="Written by Lauren O\'Donnell, [email protected]. Please reference \"O'Donnell, Lauren J., and C-F. Westin. Automatic tractography segmentation using a high-dimensional white matter atlas. Medical Imaging, IEEE Transactions on 26.11 (2007): 1562-1575.\"")
parser.add_argument(
'inputDirectory',
help='A directory of .csv or txt measurement files from Slicer tractography measurements.')
Expand Down
3 changes: 1 addition & 2 deletions utilities/wm_transform_polydata.py
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -17,8 +17,7 @@ def _build_arg_parser():

parser = argparse.ArgumentParser(
description="Applies preprocessing to input directory. Downsamples, removes short fibers. Preserves tensors and scalar point data along retained fibers.",
epilog="Written by Lauren O\'Donnell, [email protected]",
version='1.0')
epilog="Written by Lauren O\'Donnell, [email protected]")
parser.add_argument(
'inputDirectory',
help='Contains whole-brain tractography as vtkPolyData file(s).')
Expand Down