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@StatFunGen

StatFunGen

where statistical genetics converges with functional genomics

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  1. xqtl-protocol xqtl-protocol Public

    Molecular QTL analysis protocol developed by ADSP Functional Genomics Consortium

    Jupyter Notebook 47 48

  2. pecotmr pecotmr Public

    Post-GWAS enrichment, colocalization, TWAS and Mendelian Randomization to integrate molecular QTL and GWAS.

    C++ 27 19

  3. colocboost colocboost Public

    R package implementing multi-context colocalization analysis method for molecular QTL and GWAS studies

    R 6 1

  4. pixi-setup pixi-setup Public

    Default software packages installation on PC, Mac, HPC and cloud via pixi

    Python 1 1

  5. colocboost-paper colocboost-paper Public

    Data and code to reproduce analyses in ColocBoost manuscript

    Jupyter Notebook 1 2

  6. SuSiEGLMM.jl SuSiEGLMM.jl Public

    Julia package for sum of single effects regression with generalized linear mixed model

    Julia

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