Web table psql #81
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Web table psql #81
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…into web-table-psql
…into web-table-psql
…ed_ortho_database
Shared ortho database
* remove unused filter * add GeneProduct table * only delete for this org * add splicesitetranscript * First pass at PathwayEC global table * First pass at transcript universe table * Add some pathway details to PathwayEc * Add partitioning columns and types, remove old code * Remove old tuning manager code, create empty TranscriptPathway table * Load into TranscriptEC and TranscriptPathway tables * File renamed * Use apidb.organism for looping * Use a different delimiter internally in PLPGSQL blocks * Fix SQL error * move genemaxintrongij to genemaxjunction * subset of Junction Tables * move GeneIntJuncStats to GeneJunctionStats * fix up genejunctionstats * rename genejunction stats as this table is not about genes * fix name * Add missing table * Add missing alias * Fix issue with EC number positions and add timestamp * PSQL for undoing TranscriptPathway * add few indexes for transcriptpathway tables * minor changes to hit partitions * wip; moved some comparative things around * remove GroupPhylogeneticProfile as it is now circular. other small changes * add custom undo script for org specific genomics ortholog tables * refactor intronsupportlevel * new name for junction stats table * Remove PathwayNodeGene SQLs, we don't need this table * Fix garbled comments * Load into existing partitioned table instead of creating * Add SQL to create empty partitioned table and to truncate on undo * low conf IntronJunction Support level should be inclusive --------- Co-authored-by: Kathryn Crouch <[email protected]>
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