FMRIQA_app

This includes everything required (except for the "spm12r6225_with_vbm8r435_compiled" directory and "FMRIQA_v4_0_0" compiled MATLAB executable, which are too large to commit) to build a docker and corresponding singularity container for the FMRIQA pipeline.

Docker Hub

Singularity Hub

Build Instructions:

Just clone and run build.sh:

git clone https://github.com/vuiiscci/FMRIQA_app.git
cd FMRIQA_app/
./build.sh

NOTE that you must have "spm12r6225_with_vbm8r435_compiled" directory and "FMRIQA_v4_0_0" compiled MATLAB executable.

Run Instructions:

For docker:

sudo docker run --rm \
-v $(pwd)/INPUTS/:/INPUTS/ \
-v $(pwd)/OUTPUTS:/OUTPUTS/ \
--user $(id -u):$(id -g) \
vuiiscci/fmriqa

For singularity:

singularity run -e \
-B INPUTS/:/INPUTS \
-B OUTPUTS/:/OUTPUTS \
shub://vuiiscci/FMRIQA_app