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Zhuang Lab

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  1. storm-analysis storm-analysis Public

    STORM movie analysis code

    Python 118 92

  2. storm-control storm-control Public

    Microscope control software

    Python 67 68

  3. MERFISH_analysis MERFISH_analysis Public

    Matlab software for the analysis of MERFISH data and the construction of MERFISH probes.

    MATLAB 50 33

  4. matlab-storm matlab-storm Public

    GUIs and functions for analyzing STORM data in MATLAB

    MATLAB 39 61

  5. MERlin MERlin Public

    Forked from emanuega/MERlin

    MERFISH decoding software

    Python 26 8

  6. Chromatin_Analysis_2020_cell Chromatin_Analysis_2020_cell Public

    Source codes and example scripts for chromatin tracing projects in Zhuang lab

    Jupyter Notebook 26 6

Repositories

Showing 10 of 14 repositories
  • storm-control Public

    Microscope control software

    Python 67 68 17 1 Updated Feb 13, 2025
  • Chromatin_Analysis_MOp Public

    Analysis codes and scripts for chromatin of MOp

    Jupyter Notebook 3 MIT 1 0 0 Updated Jan 11, 2025
  • whole_mouse_brain_MERFISH_atlas_scripts_2023 Public
    Jupyter Notebook 8 5 0 0 Updated Mar 29, 2024
  • storm-analysis Public

    STORM movie analysis code

    Python 118 92 3 1 Updated Feb 23, 2024
  • MERlin Public Forked from emanuega/MERlin

    MERFISH decoding software

    Python 26 MIT 33 0 0 Updated Jun 26, 2023
  • SpatialBrainAgingCell22 Public
    Jupyter Notebook 12 4 0 0 Updated Dec 19, 2022
  • Epigenomic_MERFISH Public
    MATLAB 2 0 0 0 Updated Oct 21, 2022
  • Chromatin_Analysis_2020_cell Public

    Source codes and example scripts for chromatin tracing projects in Zhuang lab

    Jupyter Notebook 26 MIT 6 3 0 Updated Jan 27, 2022
  • MERFISH_analysis Public

    Matlab software for the analysis of MERFISH data and the construction of MERFISH probes.

    MATLAB 50 33 4 1 Updated Aug 1, 2021
  • BICCN_MOp_2021 Public Forked from mengzhang1003/BICCN_MOp_2021
    Jupyter Notebook 0 MIT 1 0 0 Updated Apr 28, 2021
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