Exploring variants and candidate genes associated with TD
Inspecting Genetic Variations Associated to Tardive Dyskinesia: An Exploratory Study
Final Project for assignment of BMI5330, View TDMethods.pdf for my exploratory pipeline
AssociatedVaraints: Contains variants in each inspected candidate gene, these files were created by getVariantsperGene.sh
SCREENbyENCODEdata: Contains bed files of ENCODE annotated cis-regulatory regions for each inspected candidate gene, these files were output of SCREENbyENCODE web-based tool
getMatches.R: Gets matches for variants located within specified ENCODE regulatory regions. It returns gene name, variant position, and regulatory region information.