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@berkeleybop

Berkeley BOP

Welcome to BBOP!

Berkeley Bioinformatics Open-source Projects (BBOP), located at the Lawrence Berkeley National Laboratory, is a group of scientific researchers and software engineers dedicated to developing tools and applying computational technologies to problems in biology and biomedicine.

This GitHub organization houses our website content and various other repos for public or internal use.

For more info about BBOP, including our people and projects, please see our website!

Popular repositories Loading

  1. artificial-intelligence-ontology artificial-intelligence-ontology Public

    An ontology modeling classes and relationships describing deep learning networks, their component layers and activation functions, machine learning methods, as well as AI/ML potential biases.

    Jupyter Notebook 39 8

  2. lsi.sh lsi.sh Public

    MegaCLI script to configure and monitor LSI raid cards.

    Shell 14 6

  3. jbrowse jbrowse Public

    Forked from GMOD/jbrowse

    AJAX Genome Browser

    JavaScript 13 2

  4. bbop-skills bbop-skills Public

    Best practices for BBOP group repos, intended for coding agents and humans

    Just 8

  5. bbop-js bbop-js Public

    Cross-platform client and server JavaScript library, with a concentration on Solr, graphs, utilities, and convenience methods.

    JavaScript 6 5

  6. berkeleybop.github.io berkeleybop.github.io Public

    Homepages for the Berkeley BOP.

    CSS 4 10

Repositories

Showing 10 of 41 repositories
  • metpo Public

    Microbial ecophysiological trait and phenotype ontology

    berkeleybop/metpo’s past year of commit activity
    Python 1 0 86 1 Updated Dec 12, 2025
  • bbop-skills Public

    Best practices for BBOP group repos, intended for coding agents and humans

    berkeleybop/bbop-skills’s past year of commit activity
    Just 8 0 0 0 Updated Dec 8, 2025
  • berkeleybop.github.io Public

    Homepages for the Berkeley BOP.

    berkeleybop/berkeleybop.github.io’s past year of commit activity
    CSS 4 GPL-2.0 10 3 1 Updated Dec 5, 2025
  • berkeleybop/metpo-kgm-studio’s past year of commit activity
    Python 1 BSD-3-Clause 0 12 1 Updated Nov 24, 2025
  • metpo-kgm-copier Public

    Copier template for METPO/KG-Microbe ontology curation workflow

    berkeleybop/metpo-kgm-copier’s past year of commit activity
    Python 0 0 0 0 Updated Oct 2, 2025
  • berkeleybop/contextualizer’s past year of commit activity
    Python 1 3 3 1 Updated May 16, 2025
  • artificial-intelligence-ontology Public

    An ontology modeling classes and relationships describing deep learning networks, their component layers and activation functions, machine learning methods, as well as AI/ML potential biases.

    berkeleybop/artificial-intelligence-ontology’s past year of commit activity
    Jupyter Notebook 39 8 48 0 Updated Nov 12, 2024
  • bbop-manager-golr Public

    Manager for handling communication and callbacks with GOlr instances.

    berkeleybop/bbop-manager-golr’s past year of commit activity
    HTML 0 BSD-3-Clause 1 6 1 Updated Jun 11, 2024
  • bbop-core Public

    A set of useful and common JavaScript functions to supplement other more basic utility libraries.

    berkeleybop/bbop-core’s past year of commit activity
    JavaScript 0 BSD-3-Clause 1 1 0 Updated Jun 11, 2024
  • bbop-rest-manager Public

    The is the "new" version of the manager event model for BBOP systems.

    berkeleybop/bbop-rest-manager’s past year of commit activity
    JavaScript 1 2 2 2 Updated Nov 27, 2023

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