Troubleshoot CI #379

	name: CI Build

	on: [push]

	jobs:
	build:
	runs-on: ubuntu-latest
	strategy:
	max-parallel: 4
	matrix:
	python-version: ["3.8", "3.9", "3.10", "3.11"]
	steps:
	- uses: actions/checkout@v1
	- name: Set up Python ${{ matrix.python-version }}
	uses: actions/setup-python@v1
	with:
	python-version: ${{ matrix.python-version }}
	- name: Install
	run: \|
	sudo apt-get update
	sudo apt-get install minimap2 samtools fastqc tabix
	curl -L -O http://ccb.jhu.edu/software/FLASH/FLASH-1.2.11-Linux-x86_64.tar.gz && tar -xzf FLASH-1.2.11-Linux-x86_64.tar.gz && sudo cp FLASH-1.2.11-Linux-x86_64/flash /usr/local/bin/ && rm -r FLASH-1.2.11*
	python -m pip install --upgrade pip
	pip install .
	mhpl8r getrefr
	make devdeps
	- name: Test with pytest
	run: \|
	# Move the source code so the tests run on the installed code (which is where the
	# reference genome index is placed) rather than the source code
	mv microhapulator mhpl8r_src
	make test
	# Move the code back for style check
	mv mhpl8r_src microhapulator
	- name: Style check
	run: make style

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