Landing repo for database optimization and design class

Instructors: Christian Ebeling, Charles Tapley Hoyt, Nanditha Mallesh, Andrej Konotopez

• Reverse Causal Reasoning paper

• HotNet2 algorithm paper and presentation by Charlie
• Ten Years of Pathway Analysis: Current Approaches and Outstanding Challenges review paper and presentation by Lilit
• Pathway and network analysis of cancer genomes application paper and presentation by Asma
• Logic-Based Models for the Analysis of Cell Signalling Networks review paper and presentation by Hanan
• A Primer on Learning in Bayesian Networks for Computational Biology review paper and presentation by Amir

• Introduction to Bioinformatics 1
  • Section 4.3 - Network Analysis
• Microarray Data Analysis and Network Theory
  • Lecture 8 - Coexpression Networks
  • Lecture 9 - Network Science
• Computational Systems Biology Seminar
  • Modeling of Biological Systems slides
  • Bayesian Networks in Computational Life Sciences slides

• Markdown tutorial

• NumPy and SciPy
  • Documentation
  • Quick Start
• Pandas
  • Documentation
  • 10 Minutes to Pandas
• NetworkX
  • Documentation
  • Tutorial
• Matplotlib
  • Introduction
  • Documentation

• SQLite3
  • Download
  • CLI Tutorial
  • Python Connector
• PyMySQL

• Scikit-Learn
  • Documentation
  • All Tutorials
  • Supervised Learning Tutorial