🎨 add comments in ref map tutorial

bowang-lab · Nov 8, 2023 · 4dea6f6 · 4dea6f6
1 parent 9e165cc
commit 4dea6f6
Showing 1 changed file with 3 additions and 3 deletions.
diff --git a/tutorials/Tutorial_Reference_Mapping.ipynb b/tutorials/Tutorial_Reference_Mapping.ipynb
@@ -121,12 +121,12 @@
     "    adata,\n",
     "    model_dir,\n",
     "    gene_col=gene_col,\n",
-    "    obs_to_save=cell_type_key,\n",
+    "    obs_to_save=cell_type_key,  # optional arg, only for saving metainfo\n",
     "    batch_size=64,\n",
     "    return_new_adata=True,\n",
     ")\n",
     "\n",
-    "# # running on cpu\n",
+    "# # running on cpu, not recommended since it is slow\n",
     "# ref_embed_adata = scg.tasks.embed_data(\n",
     "#     adata,\n",
     "#     model_dir,\n",
@@ -170,7 +170,7 @@
     "    test_adata,\n",
     "    model_dir,\n",
     "    gene_col=gene_col,\n",
-    "    obs_to_save=cell_type_key,\n",
+    "    obs_to_save=cell_type_key,  # optional arg, only for saving metainfo\n",
     "    batch_size=64,\n",
     "    return_new_adata=True,\n",
     ")\n",