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59 Open 183 Closed
59 Open 183 Closed
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Issues list

[Feature] Run cell detection on subvolume of an image and not just select z planes enhancement New feature or request
#468 opened Nov 7, 2024 by IgorTatarnikov
[Feature] expose GPU/CPU choice and other parameters to pytorch cellfinder version enhancement New feature or request good first issue Good for newcomers
#464 opened Oct 18, 2024 by alessandrofelder
4
[Feature] an (existing, like ImageJ model zoo - or new) place to share cellfinder models enhancement New feature or request
#450 opened Aug 9, 2024 by alessandrofelder
1
Tests are failing with napari 0.5.0 bug Something isn't working
#443 opened Jul 11, 2024 by adamltyson
6
[Feature] Use a registry file for test data instead of hard-coding paths in conftest.py enhancement New feature or request
#439 opened Jun 6, 2024 by alessandrofelder
5
Check performance on Windows enhancement New feature or request
#426 opened May 28, 2024 by adamltyson
2
[BUG] Kernel crashes when running the example bug Something isn't working
#415 opened May 7, 2024 by priya-velu5
4
Standardise the use of axes in cellfinder enhancement New feature or request
#413 opened May 7, 2024 by adamltyson
2
[Feature] Benchmark napari versus brainmapper code enhancement New feature or request
#391 opened Feb 27, 2024 by alessandrofelder
[Feature] Allow the user to select points from more than one layer at once in the curation interface enhancement New feature or request
#362 opened Jan 16, 2024 by adamltyson
2
Update the sample data cellfinder-napari Issue concerns the napari plugin enhancement New feature or request
#305 opened Dec 3, 2023 by adamltyson
Update cell classification network cellfinder-core Issue concerns the core backend enhancement New feature or request
#267 opened Nov 29, 2023 by adamltyson
@IgorTatarnikov
4
Investigate parameter combinations causing cellfinder to stall bug Something isn't working cellfinder-core Issue concerns the core backend
#270 opened Oct 12, 2023 by adamltyson
Add benchmarks for training [Feature] cellfinder-core Issue concerns the core backend enhancement New feature or request
#274 opened Jul 20, 2023 by sfmig
@sfmig
[BUG] mypy needs stub file for cellfinder-core bug Something isn't working cellfinder-core Issue concerns the core backend
#278 opened Jul 6, 2023 by willGraham01
Avoid hard-coding of ~/.brainglobe/cellfinder/models cellfinder-core Issue concerns the core backend
#280 opened Jul 3, 2023 by alessandrofelder
1
Error is raised if no cells are detected. bug Something isn't working cellfinder-napari Issue concerns the napari plugin
#306 opened May 23, 2023 by adamltyson
Move test data to gin and fetch via pooch cellfinder-core Issue concerns the core backend
#282 opened May 11, 2023 by alessandrofelder
Add appropriate typing or refactor get_cell_detector cellfinder-core Issue concerns the core backend enhancement New feature or request
#283 opened May 9, 2023 by alessandrofelder
Add tests for structure splitting code cellfinder-core Issue concerns the core backend enhancement New feature or request
#285 opened Apr 18, 2023 by dstansby
1
Add docs to structure splitting code cellfinder-core Issue concerns the core backend enhancement New feature or request
#286 opened Apr 18, 2023 by dstansby
Investigate replacing custom connected-component labelling with 3rd party library cellfinder-core Issue concerns the core backend enhancement New feature or request
#287 opened Apr 17, 2023 by dstansby
3
[Feature] Warn or error if ball_z or ball_xy_size is less than voxel sizes cellfinder-core Issue concerns the core backend enhancement New feature or request
#288 opened Apr 4, 2023 by dstansby
Aim for full test coverage cellfinder-core Issue concerns the core backend
#290 opened Mar 30, 2023 by alessandrofelder
[Feature] Add API docs cellfinder-core Issue concerns the core backend enhancement New feature or request
#291 opened Mar 30, 2023 by dstansby
1
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