API Auto Documentation

This repository uses Gemini 1.5 Flash to convert documentation about NCBI's EUtils API into structured JSON that is compliant with API Zoo JSON format. In addition, it generates a list of queries that would require invoking the API to solve.

In order to run this code, you will need an API key to access Gemini. Google provides free API access to Gemini 1.5 Flash at a rate of 15 Requests Per Minute, 1 million Tokens Per Minute, and 1,500 Requests Per Day. After creating a gemini API key, save it within a .env file as GEMINI_API_KEY.

GEMINI_API_KEY=your_super_secret_key_goes_here

Draft Workflow

graph LR;
  raw_text["Raw Text"] --> table_context["Table Context"];
  table_context --> md["Markdown"];
  md --> json["JSON"];
  md --> api_examples["API Examples"];
  md --> verbalized_query["Verbalized Query"];
  verbalized_query --> complex_queries["Complex Queries"];
  api_examples --> bio_entrez_examples["BioEntrez Examples"];
  api_examples --> complex_api_examples["Complex API Examples"];

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To Do:

• Augment first pass of instructions with multihop data from NCBI tutorials.
• Increase complexity and diversity of instructions a la WizardLM and MagicCoder.
• Get documentation for all of BioPython