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NMF updates including nmf_torch_hals#362

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sjfleming wants to merge 59 commits into
nmffrom
nmf_sf-amortized
Draft

NMF updates including nmf_torch_hals#362
sjfleming wants to merge 59 commits into
nmffrom
nmf_sf-amortized

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@sjfleming

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Implement the nmf_torch_hals algorithm which uses per-cell local latent variables and whose performance seems to match that of Kotliar's cNMF on a biological test of human data doing donor loading regression against a donor phenotype (gets the same t-statistics).

@sjfleming sjfleming marked this pull request as draft April 2, 2026 22:09
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