scArches#404
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Implement scArches (https://www.nature.com/articles/s41587-021-01001-7)
This would allow CAS, for example, to do a quick, minimal re-training step with only user query data, in order to align query data with a reference.
Note however, according to me and verified by Gemini:
In the CAS context, this means we would need to train an scVI model with batch included in the encoder, and then fine-tune using scArches on the query data from a user.