CompassR

Overview

We developed CompassR to support more in-depth analyses and visualizations of CRE-gene linkages. CompassR is an open source R package built upon CompassDB. CompassR can be used to analyze and visualize CRE-gene linkages in one or multiple samples, and identify TFs whose motifs are enriched in selected CREs.

Installation

To install the latest release of CompassR from GitHub:

if (!requireNamespace("remotes", quietly = TRUE))
    install.packages("remotes")
remotes::install_github("changxinw/CompassR")

Tutorial

Here, we provide three examples for using CompassR from tissue level, celltype level, and single-sample level.

1. Tissue level: Please go the the tissue_example.Rmd for tissue-level example.
2. Celltype level: Please go the the celltype_example.Rmd for celltype-level example.
3. Sample level: Please go the the sample_example.Rmd for sample-level example.