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[misc] scib-metrics scripts#945

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ebezzi wants to merge 33 commits intomainchanzuckerberg/cellxgene-census:mainfrom ebezzi/scib-metrics-scriptschanzuckerberg/cellxgene-census:ebezzi/scib-metrics-scriptsCopy head branch name to clipboard

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Commits

Commits on Jan 22, 2024

• init scripts

  ebezzi

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  b5b2dd5

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• add vars

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  66f0761

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• add pickle

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• Add requirements.txt

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Commits on Jan 23, 2024

• Add yaml file

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  6a08ec1

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• typo

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  78d4029

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• changes

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  5254ab8

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• changes

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  9abf1ff

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• add subsetting

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  8e70861

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• add missing embs

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  e50ce12

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• fix

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Commits on Jan 24, 2024

• Add tiledbsoma support

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  9d47c94

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• fix indexing

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  3387c4f

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• Add asarray

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  29acd78

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• Proper usage of soma_joinid

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• Proper usage of soma_joinid, pass 2

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  b282b6f

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Commits on Feb 20, 2024

• try: ilisi_knn metric

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Commits on Feb 21, 2024

• fix matrix

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  7050c12

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• metric fix

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Commits on Jul 1, 2024

• Update to scib 0.5

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• Merge branch 'main' into ebezzi/scib-metrics-scripts

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  bfdac76

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• Add classifier metrics

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• All metrics

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Commits on Jul 2, 2024

• fix missing key

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  386880a

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• Change query

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Commits on Jul 5, 2024

• Fixes

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Commits on Jul 9, 2024

• Add ignore directives

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  1e059ca

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• [misc] update metrics script for 2024 LTS

  pablo-gar

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  9596794

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• Entropy fix

  ebezzi

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  ef0b96f

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• Merge branch 'ebezzi/scib-metrics-scripts' of github.com:chanzuckerberg/cell-census into ebezzi/scib-metrics-scripts

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  510392b

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• Lint

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Commits on Jul 10, 2024

• add plotting scripts

  pablo-gar

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Commits on Jul 12, 2024

• update metrics plotting script

  pablo-gar

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