Search results

CpG_preparation.R to check whether genome is hosted on UCSC before trying to pull down CpG islands

Status: Open.

#31 In clark-lab/Bisulfite_tools;

· astatham opened on Nov 12, 2013

Add option for NOMe

Status: Open.

#30 In clark-lab/Bisulfite_tools;

· astatham opened on Oct 31, 2013

Add lambda genome for % conversion

enhancement

Status: Open.

#29 In clark-lab/Bisulfite_tools;

· astatham opened on Oct 14, 2013

bedGraph_to_Rdata still uses hg19

bug

Status: Open.

#28 In clark-lab/Bisulfite_tools;

· astatham opened on Oct 10, 2013

Add (optional?) FLASh integration

enhancement

Status: Open.

#26 In clark-lab/Bisulfite_tools;

· astatham opened on Aug 27, 2013

Pipeline fails if the directory name starts with a number at the first qsub

bug

Status: Open.

#25 In clark-lab/Bisulfite_tools;

· astatham opened on Aug 26, 2013

Add option to trim sequenom adaptors (needed for MiSeq)

enhancement

Status: Open.

#24 In clark-lab/Bisulfite_tools;

· astatham opened on Aug 26, 2013

Integrate MiSeq amplicon alignment

enhancement

Status: Open.

#23 In clark-lab/Bisulfite_tools;

· astatham opened on Aug 26, 2013

Split fastqc section into separate qsub

bug

Status: Open.

#21 In clark-lab/Bisulfite_tools;

· astatham opened on Aug 10, 2013

Merge PE and SE scripts

Status: Open.

#20 In clark-lab/Bisulfite_tools;

· astatham opened on Aug 5, 2013

Remove wolfpack specific gunk

Code cleanup

Not important

Status: Open.

#19 In clark-lab/Bisulfite_tools;

· astatham opened on Aug 1, 2013

Add fastq_screen to prep_reads

Not important

Status: Open.

#18 In clark-lab/Bisulfite_tools;

· astatham opened on Jul 26, 2013