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diegozea / MIToS.jl Public

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Add PSSM computation#193

Open

diegozea wants to merge 13 commits intomasterdiegozea/MIToS.jl:masterfrom

codex/implement-pssm-function-for-msadiegozea/MIToS.jl:codex/implement-pssm-function-for-msaCopy head branch name to clipboard

Conversation Commits13 (13)Checks Files changed

Open

Add PSSM computation#193
diegozea wants to merge 13 commits intomasterfrom
codex/implement-pssm-function-for-msa

Commits

Commits on Dec 18, 2025

Add PSSM computation
diegozea
committed
Improve the PSSM implementation
diegozea
committed
PSSM: cover background validation branches
diegozea
committed
Refactor PSSM error handling, improve tests, remove dims
diegozea
committed

Commits on Dec 19, 2025

Rename PSSM function and references to position_specific_scoring_matrix for clarity
diegozea
committed
Refactor PSSM base handling to support multiple types for base and improve conversion logic
diegozea
committed
Refactor PSSM structure and tests to use PositionSpecificScoreMatrix and NamedArray
diegozea
committed
Remove background field from PositionSpecificScoreMatrix and update related tests
diegozea
committed

Commits on Dec 22, 2025

Rename AbstractColumnScores to AbstractPositionSpecificMatrix and update related structures and methods
diegozea
committed
Add PositionFrequencyMatrix and PositionSpecificProbabilityMatrix types with associated functions
diegozea
committed
Refactor PSSM tests to improve readability and simplify comparison logic
diegozea
committed
Add getindex method for AbstractPositionSpecificMatrix to improve indexing functionality
diegozea
committed

Commits on Dec 23, 2025

WIP
diegozea
committed

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