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68 followers · 1 following

Achievements

Achievement: Pair Extraordinairex2Achievement: Pull Sharkx3Achievement: StarstruckAchievement: YOLOAchievement: QuickdrawAchievement: Arctic Code Vault Contributor

Achievements

Achievement: Pair Extraordinairex2Achievement: Pull Sharkx3Achievement: StarstruckAchievement: YOLOAchievement: QuickdrawAchievement: Arctic Code Vault Contributor

Organizations

@Teichlab @MarioniLab @scverse

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  1. MarioniLab/miloR Public

    R package implementation of Milo for testing for differential abundance in KNN graphs

    R 365 23

  2. milopy Public

    Python implementation of Milo for differential abundance testing on KNN graph

    Jupyter Notebook 66 8

  3. Teichlab/Pan_fetal_immune Public

    Collection of scripts for analysis of pan fetal immune atlas

    Jupyter Notebook 26 6

  4. MarioniLab/oor_benchmark Public

    A sandbox for benchmarking detection of out-of-reference cells in single-cell genomics data

    Python 13 2

  5. MarioniLab/oor_design_reproducibility Public

    Jupyter Notebook 15 1

  6. scverse/pertpy Public

    Perturbation Analysis in the scverse ecosystem.

    Python 169 29

265 contributions in the last year

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Activity overview

Contributed to emdann/emdann.github.io, scverse/pertpy, scverse/pertpy-tutorials and 19 other repositories
Loading A graph representing emdann's contributions from April 14, 2024 to April 17, 2025. The contributions are 80% commits, 15% issues, 4% pull requests, 1% code review.

Contribution activity

April 2025

Created 2 repositories

Created an issue in const-ae/glmGamPoi that received 1 comment

NaNs in standard errors of LFC

Hey @const-ae, I'm using the compute_lfc_se parameter in test_de to get the standard error of the log fold changes to run ash/mash. In my results I…

1 comment
Opened 1 other issue in 1 repository
velten-group/crispat 1 closed
3 contributions in private repositories Apr 3 – Apr 16
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