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epigen-UCSD

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  1. atac_seq_pipeline atac_seq_pipeline Public

    Python 6

  2. huang-natgen2021 huang-natgen2021 Public

    Jupyter Notebook 4

  3. HiC_scripts HiC_scripts Public

    HiC processing scripts used in the center.

    Jupyter Notebook 3 4

  4. merfish_tools merfish_tools Public

    Functions and scripts for processing RNA MERFISH data

    Jupyter Notebook 2 1

  5. utility_epigen utility_epigen Public

    Shell 1 1

  6. chipseq_pipeline chipseq_pipeline Public

    Java 1

Repositories

Showing 10 of 22 repositories
  • MERMAKE Public Forked from deprekate/MERMAKE
    Python 0 GPL-3.0 1 0 0 Updated Apr 11, 2025
  • MERlin Public Forked from emanuega/MERlin

    MERlin is an extensible analysis pipeline applied to decoding MERFISH data

    Python 1 MIT 33 1 0 Updated Mar 31, 2025
  • new_merfish_pipeline Public
    Jupyter Notebook 0 0 0 0 Updated Mar 22, 2025
  • Spateo-with-MERFISH-Data Public
    0 0 0 0 Updated Nov 21, 2023
  • bican Public
    Jupyter Notebook 0 1 0 0 Updated Nov 3, 2023
  • merfish_tools Public

    Functions and scripts for processing RNA MERFISH data

    Jupyter Notebook 2 1 0 0 Updated Jul 6, 2023
  • MERlin_Parameters Public

    Parameter files for MERlin

    0 0 0 0 Updated Feb 21, 2023
  • epigen_ucsd_django Public
    Python 1 1 140 0 Updated Jun 28, 2021
  • huang-natgen2021 Public
    Jupyter Notebook 4 0 0 0 Updated Jun 27, 2021
  • utility_epigen Public
    Shell 1 1 0 0 Updated Mar 5, 2021
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