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824 Commits
adapterremoval
adapterremoval
 
 
admixture/v1.3.0
admixture/v1.3.0
 
 
alfred
alfred
 
 
alien_trimmer
alien_trimmer
 
 
artic-ncov2019
artic-ncov2019
 
 
bam-readcount/v1.0.1
bam-readcount/v1.0.1
 
 
bamUtil/v1.0.15
bamUtil/v1.0.15
 
 
bayestraits
bayestraits
 
 
bbmap/v39.01
bbmap/v39.01
 
 
bcftools
bcftools
 
 
bedtools
bedtools
 
 
bmge/v1.12
bmge/v1.12
 
 
bowtie
bowtie
 
 
bowtie2
bowtie2
 
 
bwa/v0.7.17
bwa/v0.7.17
 
 
canu/v2.0
canu/v2.0
 
 
catch/v1.5.1
catch/v1.5.1
 
 
cd-git/v4.8.1
cd-git/v4.8.1
 
 
checkm
checkm
 
 
civet/v2.1.2
civet/v2.1.2
 
 
clustal_omega
clustal_omega
 
 
damageprofiler/v1.1
damageprofiler/v1.1
 
 
deseq/v1.39.0
deseq/v1.39.0
 
 
dsrc/v2.0.2
dsrc/v2.0.2
 
 
epa-ng/v0.3.8
epa-ng/v0.3.8
 
 
fastani
fastani
 
 
fastcodeml
fastcodeml
 
 
fastme
fastme
 
 
fastqc
fastqc
 
 
fastqutils
fastqutils
 
 
fasttree
fasttree
 
 
fastxtoolkit/v0.0.14
fastxtoolkit/v0.0.14
 
 
finestructure/v4.1.1
finestructure/v4.1.1
 
 
gblocks/v0.91b
gblocks/v0.91b
 
 
goalign
goalign
 
 
gofasta
gofasta
 
 
gotree
gotree
 
 
guppy/v3.1.5
guppy/v3.1.5
 
 
haploconduct/v0.2.1
haploconduct/v0.2.1
 
 
haplogrep/v2.4.0
haplogrep/v2.4.0
 
 
hisat2/v2.0.5
hisat2/v2.0.5
 
 
hmmer/v3.3
hmmer/v3.3
 
 
igv
igv
 
 
indelible/v1.03
indelible/v1.03
 
 
inkscape
inkscape
 
 
iqtree
iqtree
 
 
irma
irma
 
 
ivar
ivar
 
 
jphmm/v03.2015
jphmm/v03.2015
 
 
jphmm_tools
jphmm_tools
 
 
jq/v1.6
jq/v1.6
 
 
khmer
khmer
 
 
kraken
kraken
 
 
krakenuniq
krakenuniq
 
 
label/v0.6.4
label/v0.6.4
 
 
lastal/v980
lastal/v980
 
 
lsd/v0.3beta-55183ca9d0
lsd/v0.3beta-55183ca9d0
 
 
lsd2
lsd2
 
 
mafft
mafft
 
 
mapdamage/v2.2.1
mapdamage/v2.2.1
 
 
maple/v0.6.11
maple/v0.6.11
 
 
mash
mash
 
 
minimap2
minimap2
 
 
minionqc/v1.4.1
minionqc/v1.4.1
 
 
mrbayes
mrbayes
 
 
multiqc
multiqc
 
 
muscle
muscle
 
 
musket/v1.1
musket/v1.1
 
 
nanoplot/v1.29.1
nanoplot/v1.29.1
 
 
nanosim/v3.1.0
nanosim/v3.1.0
 
 
newick_utilities/v1.6
newick_utilities/v1.6
 
 
nextstrain-base/build-20230208T000021Z
nextstrain-base/build-20230208T000021Z
 
 
noisy/v1.5.12
noisy/v1.5.12
 
 
paml/v4.8a
paml/v4.8a
 
 
pangolin
pangolin
 
 
papara/v2.5
papara/v2.5
 
 
pastml
pastml
 
 
pathphynder
pathphynder
 
 
pcoc/v898c138
pcoc/v898c138
 
 
perl
perl
 
 
phylodeep
phylodeep
 
 
phyml-sms
phyml-sms
 
 
phyml
phyml
 
 
picard
picard
 
 
polecat/b4a36f3
polecat/b4a36f3
 
 
predicthaplo/v1.0
predicthaplo/v1.0
 
 
ptp/v4bb2daf
ptp/v4bb2daf
 
 
python-evol
python-evol
 
 
python-ml
python-ml
 
 
python
python
 
 
r-base
r-base
 
 
r-evol
r-evol
 
 
r-extended
r-extended
 
 
r-gisaid/v4.1.2
r-gisaid/v4.1.2
 
 
r-sra
r-sra
 
 
rappas/v1.21
rappas/v1.21
 
 
raxml-ng
raxml-ng
 
 
raxml
raxml
 
 
reseq/053b8d1
reseq/053b8d1
 
 
rna-seqc
rna-seqc
 
 

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Dockerfiles

List of Dockerfiles used to build some docker images. See : DockerHub page.

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Dockerfiles for tools commonly used for phylogenetic analyses

hub.docker.com/r/evolbioinfo/

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docker bioinformatics evolutionary

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