Name	Name	Last commit message	Last commit date
Latest commit fredericlemoine Merge branch 'master' of github.com:evolbioinfo/dockerfiles Mar 13, 2025 9c8b3b6 · Mar 13, 2025 History 824 Commits
adapterremoval	adapterremoval	sdrmhunter v0.2.1.6	Jan 18, 2023
admixture/v1.3.0	admixture/v1.3.0	sdrmhunter v0.2.1.6	Jan 18, 2023
alfred	alfred	sdrmhunter v0.2.1.6	Jan 18, 2023
alien_trimmer	alien_trimmer	Added AlienTrimmer 2.1	Jun 16, 2023
artic-ncov2019	artic-ncov2019	Added artic ncov / fieldbioinformatics v1.3.0	Feb 3, 2023
bam-readcount/v1.0.1	bam-readcount/v1.0.1	Added bam-readcount v1.0.1	Dec 21, 2023
bamUtil/v1.0.15	bamUtil/v1.0.15	add bamUtil	Oct 22, 2024
bayestraits	bayestraits	sdrmhunter v0.2.1.6	Jan 18, 2023
bbmap/v39.01	bbmap/v39.01	Added BBMap v39.01	Nov 28, 2022
bcftools	bcftools	sdrmhunter v0.2.1.6	Jan 18, 2023
bedtools	bedtools	sdrmhunter v0.2.1.6	Jan 18, 2023
bmge/v1.12	bmge/v1.12	sdrmhunter v0.2.1.6	Jan 18, 2023
bowtie	bowtie	Added bowtie v1.3.1	Jul 4, 2023
bowtie2	bowtie2	Added bowtie2 v2.5.1	Jul 4, 2023
bwa/v0.7.17	bwa/v0.7.17	sdrmhunter v0.2.1.6	Jan 18, 2023
canu/v2.0	canu/v2.0	sdrmhunter v0.2.1.6	Jan 18, 2023
catch/v1.5.1	catch/v1.5.1	Updated catch dockerfile	Jan 24, 2023
cd-git/v4.8.1	cd-git/v4.8.1	sdrmhunter v0.2.1.6	Jan 18, 2023
checkm	checkm	sdrmhunter v0.2.1.6	Jan 18, 2023
civet/v2.1.2	civet/v2.1.2	sdrmhunter v0.2.1.6	Jan 18, 2023
clustal_omega	clustal_omega	sdrmhunter v0.2.1.6	Jan 18, 2023
damageprofiler/v1.1	damageprofiler/v1.1	sdrmhunter v0.2.1.6	Jan 18, 2023
deseq/v1.39.0	deseq/v1.39.0	sdrmhunter v0.2.1.6	Jan 18, 2023
dsrc/v2.0.2	dsrc/v2.0.2	sdrmhunter v0.2.1.6	Jan 18, 2023
epa-ng/v0.3.8	epa-ng/v0.3.8	sdrmhunter v0.2.1.6	Jan 18, 2023
fastani	fastani	sdrmhunter v0.2.1.6	Jan 18, 2023
fastcodeml	fastcodeml	sdrmhunter v0.2.1.6	Jan 18, 2023
fastme	fastme	sdrmhunter v0.2.1.6	Jan 18, 2023
fastqc	fastqc	sdrmhunter v0.2.1.6	Jan 18, 2023
fastqutils	fastqutils	Added fastqutils dev	Nov 23, 2023
fasttree	fasttree	sdrmhunter v0.2.1.6	Jan 18, 2023
fastxtoolkit/v0.0.14	fastxtoolkit/v0.0.14	Added fastx-toolkit v0.0.14	Jun 29, 2023
finestructure/v4.1.1	finestructure/v4.1.1	sdrmhunter v0.2.1.6	Jan 18, 2023
gblocks/v0.91b	gblocks/v0.91b	sdrmhunter v0.2.1.6	Jan 18, 2023
goalign	goalign	Updated goalign dev recipe	Jun 7, 2024
gofasta	gofasta	Add gofasta v1.2.1	Aug 28, 2023
gotree	gotree	Corrected gotree dev dockerfile	Jan 16, 2024
guppy/v3.1.5	guppy/v3.1.5	sdrmhunter v0.2.1.6	Jan 18, 2023
haploconduct/v0.2.1	haploconduct/v0.2.1	sdrmhunter v0.2.1.6	Jan 18, 2023
haplogrep/v2.4.0	haplogrep/v2.4.0	sdrmhunter v0.2.1.6	Jan 18, 2023
hisat2/v2.0.5	hisat2/v2.0.5	Updated hisat2 dockerfile	Jun 29, 2023
hmmer/v3.3	hmmer/v3.3	sdrmhunter v0.2.1.6	Jan 18, 2023
igv	igv	sdrmhunter v0.2.1.6	Jan 18, 2023
indelible/v1.03	indelible/v1.03	sdrmhunter v0.2.1.6	Jan 18, 2023
inkscape	inkscape	sdrmhunter v0.2.1.6	Jan 18, 2023
iqtree	iqtree	add iqtree v2.4.0	Mar 5, 2025
irma	irma	Updated irma v1.0.3	Jan 20, 2023
ivar	ivar	sdrmhunter v0.2.1.6	Jan 18, 2023
jphmm/v03.2015	jphmm/v03.2015	sdrmhunter v0.2.1.6	Jan 18, 2023
jphmm_tools	jphmm_tools	sdrmhunter v0.2.1.6	Jan 18, 2023
jq/v1.6	jq/v1.6	sdrmhunter v0.2.1.6	Jan 18, 2023
khmer	khmer	sdrmhunter v0.2.1.6	Jan 18, 2023
kraken	kraken	Added Kraken v2.1.3	Jun 7, 2023
krakenuniq	krakenuniq	sdrmhunter v0.2.1.6	Jan 18, 2023
label/v0.6.4	label/v0.6.4	Added LABEL v0.6.4	Jan 12, 2023
lastal/v980	lastal/v980	sdrmhunter v0.2.1.6	Jan 18, 2023
lsd/v0.3beta-55183ca9d0	lsd/v0.3beta-55183ca9d0	sdrmhunter v0.2.1.6	Jan 18, 2023
lsd2	lsd2	lsd2:v2.4.1	May 4, 2023
mafft	mafft	Added mafft v7.525	Apr 2, 2024
mapdamage/v2.2.1	mapdamage/v2.2.1	sdrmhunter v0.2.1.6	Jan 18, 2023
maple/v0.6.11	maple/v0.6.11	Added MAPLE v0.6.11	Nov 19, 2024
mash	mash	sdrmhunter v0.2.1.6	Jan 18, 2023
minimap2	minimap2	Updated Minimap2 v2.26	May 9, 2023
minionqc/v1.4.1	minionqc/v1.4.1	sdrmhunter v0.2.1.6	Jan 18, 2023
mrbayes	mrbayes	sdrmhunter v0.2.1.6	Jan 18, 2023
multiqc	multiqc	sdrmhunter v0.2.1.6	Jan 18, 2023
muscle	muscle	sdrmhunter v0.2.1.6	Jan 18, 2023
musket/v1.1	musket/v1.1	sdrmhunter v0.2.1.6	Jan 18, 2023
nanoplot/v1.29.1	nanoplot/v1.29.1	Corrected NanoPlot	Jun 24, 2020
nanosim/v3.1.0	nanosim/v3.1.0	Updated nanosim	Oct 13, 2023
newick_utilities/v1.6	newick_utilities/v1.6	sdrmhunter v0.2.1.6	Jan 18, 2023
nextstrain-base/build-20230208T000021Z	nextstrain-base/build-20230208T000021Z	Added Nextstrain base build-20230208T000021Z with procps	Feb 8, 2023
noisy/v1.5.12	noisy/v1.5.12	sdrmhunter v0.2.1.6	Jan 18, 2023
paml/v4.8a	paml/v4.8a	sdrmhunter v0.2.1.6	Jan 18, 2023
pangolin	pangolin	Updated pangolin	Mar 13, 2025
papara/v2.5	papara/v2.5	sdrmhunter v0.2.1.6	Jan 18, 2023
pastml	pastml	pastml:v1.9.43	Feb 26, 2024
pathphynder	pathphynder	sdrmhunter v0.2.1.6	Jan 18, 2023
pcoc/v898c138	pcoc/v898c138	sdrmhunter v0.2.1.6	Jan 18, 2023
perl	perl	Added perl v5.32.1	Oct 21, 2024
phylodeep	phylodeep	pastml v1.9.40, phylodeep v0.3.1	Nov 24, 2022
phyml-sms	phyml-sms	sdrmhunter v0.2.1.6	Jan 18, 2023
phyml	phyml	sdrmhunter v0.2.1.6	Jan 18, 2023
picard	picard	Merge remote-tracking branch 'origin/master'	Jan 18, 2023
polecat/b4a36f3	polecat/b4a36f3	sdrmhunter v0.2.1.6	Jan 18, 2023
predicthaplo/v1.0	predicthaplo/v1.0	sdrmhunter v0.2.1.6	Jan 18, 2023
ptp/v4bb2daf	ptp/v4bb2daf	sdrmhunter v0.2.1.6	Jan 18, 2023
python-evol	python-evol	treesimulator:v0.1.15	Jun 20, 2024
python-ml	python-ml	Added python-ml v3.11.2 environment.yml	Apr 14, 2023
python	python	sdrmhunter v0.2.1.6	Jan 18, 2023
r-base	r-base	sdrmhunter v0.2.1.6	Jan 18, 2023
r-evol	r-evol	Added e-evol 4.2.2	Mar 25, 2023
r-extended	r-extended	Added r-extended v4.3.3	Jun 24, 2024
r-gisaid/v4.1.2	r-gisaid/v4.1.2	sdrmhunter v0.2.1.6	Jan 18, 2023
r-sra	r-sra	sdrmhunter v0.2.1.6	Jan 18, 2023
rappas/v1.21	rappas/v1.21	sdrmhunter v0.2.1.6	Jan 18, 2023
raxml-ng	raxml-ng	Updated raxml-ng v1.2.0	May 10, 2023
raxml	raxml	sdrmhunter v0.2.1.6	Jan 18, 2023
reseq/053b8d1	reseq/053b8d1	Added reseq 053b8d1	Aug 24, 2023
rna-seqc	rna-seqc	Added rna-seqc v1.1.8	Dec 1, 2022
s3utils/v0.6.1	s3utils/v0.6.1	sdrmhunter v0.2.1.6	Jan 18, 2023
samtools	samtools	Added samtools v1.18	Jul 26, 2023
savage/v0.4.1	savage/v0.4.1	Added Savage 0.4.1	Apr 4, 2019
schmutzi/v1.5.6	schmutzi/v1.5.6	sdrmhunter v0.2.1.6	Jan 18, 2023
sdrmhunter	sdrmhunter	sdrmhunter v0.2.1.6	Jan 18, 2023
seq-gen	seq-gen	sdrmhunter v0.2.1.6	Jan 18, 2023
seqkit	seqkit	Added seqkit v0.14.0	Jul 14, 2023
seqtk/v1.3	seqtk/v1.3	sdrmhunter v0.2.1.6	Jan 18, 2023
shorah	shorah	sdrmhunter v0.2.1.6	Jan 18, 2023
snag/master	snag/master	Added snag commit 835c479	Jun 8, 2024
snakemake/v5.6.0	snakemake/v5.6.0	snakemake	Sep 26, 2019
spades	spades	sdrmhunter v0.2.1.6	Jan 18, 2023
sphinx/v1.8.5	sphinx/v1.8.5	Added Sphinx v1.8.5	Feb 24, 2020
sra-tools/v3.0.1	sra-tools/v3.0.1	Rename folder	Jun 29, 2023
sratoolkit	sratoolkit	Merge remote-tracking branch 'origin/master'	Jan 18, 2023
star	star	Addded STAR v2.7.11a	Dec 18, 2023
strainline/8af032906e	strainline/8af032906e	sdrmhunter v0.2.1.6	Jan 18, 2023
stringtie/v2.2.1	stringtie/v2.2.1	Added stringtie v2.2.1	Jul 4, 2023
subread	subread	sdrmhunter v0.2.1.6	Jan 18, 2023
table2itol	table2itol	sdrmhunter v0.2.1.6	Jan 18, 2023
tcoffee/Version_11.00.18778a8	tcoffee/Version_11.00.18778a8	sdrmhunter v0.2.1.6	Jan 18, 2023
tqdist	tqdist	Added tqdist v1.0.2 (with gotree v0.4.4)	Dec 5, 2023
treedater	treedater	sdrmhunter v0.2.1.6	Jan 18, 2023
treesimulator	treesimulator	treesimulator:v0.1.17	Jun 21, 2024
treestructure/a831a66	treestructure/a831a66	sdrmhunter v0.2.1.6	Jan 18, 2023
treetime	treetime	sdrmhunter v0.2.1.6	Jan 18, 2023
treewas/v1.0	treewas/v1.0	sdrmhunter v0.2.1.6	Jan 18, 2023
trimal/v1.4.1	trimal/v1.4.1	sdrmhunter v0.2.1.6	Jan 18, 2023
trimgalore	trimgalore	sdrmhunter v0.2.1.6	Jan 18, 2023
ubuntu	ubuntu	Added ubuntu 24.04	Jun 28, 2024
vamb/v3.0.2	vamb/v3.0.2	sdrmhunter v0.2.1.6	Jan 18, 2023
vcftools	vcftools	sdrmhunter v0.2.1.6	Jan 18, 2023
velvet/v1.2.10	velvet/v1.2.10	sdrmhunter v0.2.1.6	Jan 18, 2023
vivan/v0.43	vivan/v0.43	sdrmhunter v0.2.1.6	Jan 18, 2023
wget/v1.17.1	wget/v1.17.1	sdrmhunter v0.2.1.6	Jan 18, 2023
.gitignore	.gitignore	sdrmhunter v0.2.1.6	Jan 18, 2023
README.md	README.md	sdrmhunter v0.2.1.6	Jan 18, 2023

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