LevSeq-1.4.0

Included oligo pool compatibility.

-Original code work the same way, added as a flag option
-Same demultiplexing
-Same variant calling but allow multiple parent to find the best aligned parent sequence.
-Different color scheme of visualization

LevSeq-1.3.1

New Features & Updates
Error Handling Enhancements:

The process now saves partial results to the output in case of an error, ensuring minimal data loss.
A reference CSV file is also saved to maintain detailed information about the process.
Basecalling Improvements:

All basecalled reads are now stored, providing a comprehensive dataset for future reference and analysis.
Variant Calling Enhancements:

Updated the variant calling code to include:
Insertions
Deletions
Benefits:
Improved reliability and traceability in case of process interruptions.
Enhanced variant detection capabilities, offering broader analysis insights.
Better record-keeping for reproducibility and future reviews.

revision release

Updated based on reviewers feedback

preprint release

Initial release to accompany bioRxiv release.