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  1. CaImAn CaImAn Public

    Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike deconvolution and result visualization.

    Python 647 372

  2. finufft finufft Public

    Non-uniform fast Fourier transform library of types 1,2,3 in dimensions 1,2,3

    C++ 315 82

  3. DeepFRI DeepFRI Public

    Deep functional residue identification

    Python 314 80

  4. CaImAn-MATLAB CaImAn-MATLAB Public

    Complete Matlab pipeline for large scale calcium imaging data analysis

    MATLAB 254 148

  5. NoRMCorre NoRMCorre Public

    Matlab routines for online non-rigid motion correction of calcium imaging data

    MATLAB 147 91

  6. deepblast deepblast Public

    Neural Networks for Protein Sequence Alignment

    Python 117 21

Repositories

Showing 10 of 188 repositories
  • neurosift Public

    Browser-based NWB visualization and DANDI exploration

    flatironinstitute/neurosift’s past year of commit activity
    TypeScript 51 Apache-2.0 6 65 1 Updated Feb 5, 2025
  • spack Public Forked from spack/spack

    A flexible package manager that supports multiple versions, configurations, platforms, and compilers.

    flatironinstitute/spack’s past year of commit activity
    Python 2 2,376 0 15 Updated Feb 5, 2025
  • nemos Public

    NEural MOdelS, a statistical modeling framework for neuroscience.

    flatironinstitute/nemos’s past year of commit activity
    Python 85 MIT 8 102 3 Updated Feb 5, 2025
  • CaImAn Public

    Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike deconvolution and result visualization.

    flatironinstitute/CaImAn’s past year of commit activity
    Python 647 GPL-2.0 372 79 (1 issue needs help) 9 Updated Feb 5, 2025
  • nixpack Public

    nix+spack = nixpack (spanix?)

    flatironinstitute/nixpack’s past year of commit activity
    Nix 44 MIT 4 1 4 Updated Feb 5, 2025
  • ManifoldEM Public

    Python package for determination of conformational continua of macromolecules from single-particle cryo-EM data

    flatironinstitute/ManifoldEM’s past year of commit activity
    Python 8 GPL-3.0 2 4 1 Updated Feb 5, 2025
  • neuroRSE Public

    Website for CCN's neuroRSE group

    flatironinstitute/neuroRSE’s past year of commit activity
    CSS 1 MIT 0 0 0 Updated Feb 5, 2025
  • fasthog Public

    Reasonably fast implementation of Histogram of Oriented Gradients with python bindings

    flatironinstitute/fasthog’s past year of commit activity
    C++ 0 MIT 1 0 0 Updated Feb 5, 2025
  • neurorse-workshops Public

    Built workshop materials for the NeuroRSE packages

    flatironinstitute/neurorse-workshops’s past year of commit activity
    HTML 0 MIT 0 0 0 Updated Feb 4, 2025
  • ccn-software-jan-2025 Public

    Materials for CCN software workshop at Flatiron, Jan 2025

    flatironinstitute/ccn-software-jan-2025’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Feb 4, 2025
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