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setting directories

Status: Open.

#23 In functional-dark-side/agnostos-wf;

· etr-asu opened on Feb 20, 2023

Split dependencies into different environment files

Status: Open.

#22 In functional-dark-side/agnostos-wf;

· vinisalazar opened on Oct 29, 2022

Spurious Shadow Step Question

Status: Open.

#21 In functional-dark-side/agnostos-wf;

· wchow opened on Jul 20, 2022

AgnostosDB "seedDB + TARA giant viruses + TARA eukaryotes" availability

Status: Open.

#20 In functional-dark-side/agnostos-wf;

· mgabriell1 opened on Jun 21, 2022

mmseqs_clustering_update.smk error: Invalid database read for database data

Status: Open.

#18 In functional-dark-side/agnostos-wf;

· mhyleung opened on May 19, 2022

SLURM HPC architecture for running AGNOSTOS

Status: Open.

#17 In functional-dark-side/agnostos-wf;

· mhyleung opened on May 12, 2022

uniprotKB database setup error

Status: Open.

#16 In functional-dark-side/agnostos-wf;

· mhyleung opened on Apr 28, 2022

rule pfam_annotation error: customising hmmsearch log directory location

Status: Open.

#15 In functional-dark-side/agnostos-wf;

· mhyleung opened on Mar 25, 2022

Installation HHblits on HPC

Status: Open.

#12 In functional-dark-side/agnostos-wf;

· merytouceda opened on Feb 11, 2022

error in step cluster_compositional_validation

Status: Open.

#11 In functional-dark-side/agnostos-wf;

· mherold1 opened on Jan 28, 2022

Running AGNOSTOS db_update on cluster without SLURM capability

Status: Open.

#10 In functional-dark-side/agnostos-wf;

· mhyleung opened on Nov 30, 2021

mmseqs2 core dump

enhancementNew feature or requestNew feature or request

Status: Open.

#4 In functional-dark-side/agnostos-wf;

· jmartinsjrbr opened on Jun 18, 2021