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Update conda_env.yml #42

Merged
merged 3 commits into from
Mar 14, 2025
Merged

Update conda_env.yml #42

merged 3 commits into from
Mar 14, 2025

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kassabry
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@kassabry kassabry commented Dec 5, 2024

Updated the environment to include all the updated versions of the packages

kassabry and others added 2 commits December 5, 2024 10:48
@kassabry
Update conda_env.yml
20da3d5 
Updated the environment to include all the updated versions of the packages
@agitter
Use conda-forge channel
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agitter commented Mar 13, 2025

Here's a full package list after I installed the new environment. It seems to work okay on my initial quick test. I'm going to pin the same packages that were pinned before.

# Name                    Version                   Build  Channel
_openmp_mutex             4.5                       2_gnu    conda-forge
brotli                    1.1.0                h2466b09_2    conda-forge
brotli-bin                1.1.0                h2466b09_2    conda-forge
bzip2                     1.0.8                h2466b09_7    conda-forge
ca-certificates           2025.1.31            h56e8100_0    conda-forge
cairo                     1.18.4               h5782bbf_0    conda-forge
contourpy                 1.3.1           py312hd5eb7cc_0    conda-forge
cycler                    0.12.1             pyhd8ed1ab_1    conda-forge
double-conversion         3.3.1                he0c23c2_0    conda-forge
font-ttf-dejavu-sans-mono 2.37                 hab24e00_0    conda-forge
font-ttf-inconsolata      3.000                h77eed37_0    conda-forge
font-ttf-source-code-pro  2.038                h77eed37_0    conda-forge
font-ttf-ubuntu           0.83                 h77eed37_3    conda-forge
fontconfig                2.15.0               h765892d_1    conda-forge
fonts-conda-ecosystem     1                             0    conda-forge
fonts-conda-forge         1                             0    conda-forge
fonttools                 4.56.0          py312h31fea79_0    conda-forge
freetype                  2.13.3               h0b5ce68_0    conda-forge
glib                      2.82.2               h3d4babf_1    conda-forge
glib-tools                2.82.2               h4394cf3_1    conda-forge
graphite2                 1.3.13            h63175ca_1003    conda-forge
gst-plugins-base          1.24.7               hb0a98b8_0    conda-forge
gstreamer                 1.24.7               h5006eae_0    conda-forge
harfbuzz                  10.4.0               h9e37d49_0    conda-forge
icu                       75.1                 he0c23c2_0    conda-forge
intel-openmp              2024.2.1          h57928b3_1083    conda-forge
joblib                    1.4.2              pyhd8ed1ab_1    conda-forge
kiwisolver                1.4.8           py312hc790b64_0    conda-forge
krb5                      1.21.3               hdf4eb48_0    conda-forge
lcms2                     2.17                 hbcf6048_0    conda-forge
lerc                      4.0.0                h63175ca_0    conda-forge
libblas                   3.9.0           31_h641d27c_mkl    conda-forge
libbrotlicommon           1.1.0                h2466b09_2    conda-forge
libbrotlidec              1.1.0                h2466b09_2    conda-forge
libbrotlienc              1.1.0                h2466b09_2    conda-forge
libcblas                  3.9.0           31_h5e41251_mkl    conda-forge
libclang13                19.1.7          default_ha5278ca_1    conda-forge
libdeflate                1.23                 h9062f6e_0    conda-forge
libexpat                  2.6.4                he0c23c2_0    conda-forge
libffi                    3.4.6                h537db12_0    conda-forge
libgcc                    14.2.0               h1383e82_2    conda-forge
libglib                   2.82.2               h7025463_1    conda-forge
libgomp                   14.2.0               h1383e82_2    conda-forge
libhwloc                  2.11.2          default_ha69328c_1001    conda-forge
libiconv                  1.18                 h135ad9c_1    conda-forge
libintl                   0.22.5               h5728263_3    conda-forge
libintl-devel             0.22.5               h5728263_3    conda-forge
libjpeg-turbo             3.0.0                hcfcfb64_1    conda-forge
liblapack                 3.9.0           31_h1aa476e_mkl    conda-forge
liblzma                   5.6.4                h2466b09_0    conda-forge
libogg                    1.3.5                h2466b09_0    conda-forge
libpng                    1.6.47               had7236b_0    conda-forge
libsqlite                 3.49.1               h67fdade_1    conda-forge
libtiff                   4.7.0                h797046b_3    conda-forge
libvorbis                 1.3.7                h0e60522_0    conda-forge
libwebp-base              1.5.0                h3b0e114_0    conda-forge
libwinpthread             12.0.0.r4.gg4f2fc60ca      h57928b3_9    conda-forge
libxcb                    1.17.0               h0e4246c_0    conda-forge
libxml2                   2.13.6               he286e8c_0    conda-forge
libxslt                   1.1.39               h3df6e99_0    conda-forge
libzlib                   1.3.1                h2466b09_2    conda-forge
matplotlib                3.10.1          py312h2e8e312_0    conda-forge
matplotlib-base           3.10.1          py312h90004f6_0    conda-forge
mkl                       2024.2.2            h66d3029_15    conda-forge
ml4bio                    0.1.5                     dev_0    <develop>
munkres                   1.1.4              pyh9f0ad1d_0    conda-forge
numpy                     2.2.3           py312h3150e54_0    conda-forge
openjpeg                  2.5.3                h4d64b90_0    conda-forge
openssl                   3.4.1                ha4e3fda_0    conda-forge
packaging                 24.2               pyhd8ed1ab_2    conda-forge
pandas                    2.2.3           py312h72972c8_1    conda-forge
pcre2                     10.44                h3d7b363_2    conda-forge
pillow                    11.1.0          py312h078707f_0    conda-forge
pip                       25.0.1             pyh8b19718_0    conda-forge
pixman                    0.44.2               had0cd8c_0    conda-forge
ply                       3.11               pyhd8ed1ab_3    conda-forge
pthread-stubs             0.4               h0e40799_1002    conda-forge
pyparsing                 3.2.1              pyhd8ed1ab_0    conda-forge
pyqt                      5.15.9          py312he09f080_5    conda-forge
pyqt5-sip                 12.12.2         py312h53d5487_5    conda-forge
pyside6                   6.8.2           py312h2ee7485_1    conda-forge
python                    3.12.9          h3f84c4b_1_cpython    conda-forge
python-dateutil           2.9.0.post0        pyhff2d567_1    conda-forge
python-tzdata             2025.1             pyhd8ed1ab_0    conda-forge
python_abi                3.12                    5_cp312    conda-forge
pytz                      2024.1             pyhd8ed1ab_0    conda-forge
qhull                     2020.2               hc790b64_5    conda-forge
qt-main                   5.15.15              h9151539_2    conda-forge
qt6-main                  6.8.2                h1259614_0    conda-forge
scikit-learn              1.6.1           py312h816cc57_0    conda-forge
scipy                     1.15.2          py312h451d5c4_0    conda-forge
setuptools                75.8.2             pyhff2d567_0    conda-forge
sip                       6.7.12          py312h53d5487_0    conda-forge
six                       1.17.0             pyhd8ed1ab_0    conda-forge
tbb                       2021.13.0            h62715c5_1    conda-forge
threadpoolctl             3.6.0              pyhecae5ae_0    conda-forge
tk                        8.6.13               h5226925_1    conda-forge
toml                      0.10.2             pyhd8ed1ab_1    conda-forge
tomli                     2.2.1              pyhd8ed1ab_1    conda-forge
tornado                   6.4.2           py312h4389bb4_0    conda-forge
tzdata                    2025a                h78e105d_0    conda-forge
ucrt                      10.0.22621.0         h57928b3_1    conda-forge
unicodedata2              16.0.0          py312h4389bb4_0    conda-forge
vc                        14.3                hbf610ac_24    conda-forge
vc14_runtime              14.42.34438         hfd919c2_24    conda-forge
vs2015_runtime            14.42.34438         h7142326_24    conda-forge
wheel                     0.45.1             pyhd8ed1ab_1    conda-forge
xorg-libxau               1.0.12               h0e40799_0    conda-forge
xorg-libxdmcp             1.1.5                h0e40799_0    conda-forge
zstd                      1.5.7                hbeecb71_1    conda-forge

@agitter agitter merged commit 932a422 into gitter-lab:master Mar 14, 2025
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@kassabry @agitter