🌱
Program Manager and PI (@qiime2);
Professor of Biology and CS (@caporaso-lab, @applied-bioinformatics, @4cscc).
- Flagstaff, Arizona, USA
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08:04
- 7h behind - cap-lab.bio
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applied-bioinformatics/iab2
applied-bioinformatics/iab2 PublicAn Introduction to Applied Bioinformatics, 2nd Edition
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caporaso-lab/developing-with-qiime2
caporaso-lab/developing-with-qiime2 PublicSource for *Developing with QIIME 2*.
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caporaso-lab/cookiecutter-qiime2-plugin
caporaso-lab/cookiecutter-qiime2-plugin PublicTemplate to help you create your new QIIME 2 plugin. 🚀
782 contributions in the last year
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Activity overview
Contributed to
caporaso-lab/developing-with-qiime2,
caporaso-lab/q2-boots,
caporaso-lab/genome-sampler
and 75 other
repositories
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Contribution activity
April 2025
Created 47 commits in 13 repositories
Created 1 repository
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gregcaporaso/q2-kmerizer
Python
This contribution was made on Apr 11
Created a pull request in qiime2/homepage that received 4 comments
Opened 24 other pull requests in 11 repositories
caporaso-lab/gut-to-soil-tutorial
7
merged
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simplify
kmer-diversity
exampleThis contribution was made on Apr 18 -
shuffle margin note to avoid overlap
This contribution was made on Apr 18
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DOC: update content for use of new kmer-diversity action
This contribution was made on Apr 17
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various updates
This contribution was made on Apr 15
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update to 2025.4
This contribution was made on Apr 9
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revert to 2024.10 to address build failure
This contribution was made on Apr 9
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Integrate feedback
This contribution was made on Apr 9
caporaso-lab/q2-boots
4
merged
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fix missing plugin reference
This contribution was made on Apr 16
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debug RTD doc build
This contribution was made on Apr 15
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Integrate docs
This contribution was made on Apr 15
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NEW: add kmer-based diversity calculations
This contribution was made on Apr 13
qiime2/amplicon-docs
3
merged
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experiment with local refs instead of xrefs
This contribution was made on Apr 9
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NEW: add site analytics tracking with plausible.io
This contribution was made on Apr 8
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various improvements
This contribution was made on Apr 7
qiime2/library
2
merged
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use cloudflare url for resources site
This contribution was made on Apr 18
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add script to collect analytics data
This contribution was made on Apr 9
gregcaporaso/q2docs-template
2
merged
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add option for templating plugin docs
This contribution was made on Apr 15
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Integrate feedback
This contribution was made on Apr 15
qiime2/q2cli
1
open
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minor help text updates
This contribution was made on Apr 20
qiime2/q2doc
1
merged
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ENH: report when requested plugins are missing from deployment
This contribution was made on Apr 16
bokulich-lab/moshpit-docs
1
open
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integrate analytics from plausible.io
This contribution was made on Apr 10
qiime2/.github
1
merged
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MAINT: general updates
This contribution was made on Apr 8
caporaso-lab/genome-sampler
1
merged
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rename tutorials
This contribution was made on Apr 7
qiime2/qiime2
1
merged
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DOC: repo documentation updates
This contribution was made on Apr 7
Reviewed 4 pull requests in 4 repositories
bokulich-lab/q2-annotate
1 pull request
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Report abundance filtering
This contribution was made on Apr 18
caporaso-lab/gut-to-soil-tutorial
1 pull request
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clarifications and note on kmer diversity
This contribution was made on Apr 18
caporaso-lab/q2-boots
1 pull request
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NEW: add kmer-based diversity calculations
This contribution was made on Apr 14
qiime2/q2-vsearch
1 pull request
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Adding qmin, qminout, qmax and qmaxout options to merge-pairs
This contribution was made on Apr 9
Opened 3 issues in 3 repositories
qiime2/q2-vizard
1
open
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make category10 the default colorPalette?
This contribution was made on Apr 17
caporaso-lab/q2-boots
1
open
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update RTD doc build to install the locally cloned version of the repository
This contribution was made on Apr 16
caporaso-lab/gut-to-soil-tutorial
1
open
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add vizard boxplot
This contribution was made on Apr 13
1
contribution
in private repositories
Apr 8