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adding tables to adata.obs and subsetting #150

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Update visium.rst
StasMakarchuk authored Dec 12, 2024

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commit 4a2c75739f6b8ef9821160541e1df3160cd660cd
6 changes: 3 additions & 3 deletions sphinx/examples/visium.rst
Original file line number Diff line number Diff line change
@@ -150,7 +150,7 @@ verify the expected directories are created.
.. code-block:: shell
:caption: Input
ls -l output/CytAssist_FFPE_Human_Breast_Cancer/0.5.2
ls -l output/CytAssist_FFPE_Human_Breast_Cancer/0.5.3
.. code-block:: shell
:caption: Output
@@ -174,7 +174,7 @@ at http://localhost:3000, and that CORS is enabled via the Access-Control-Allow-
.. code-block:: shell
:caption: Input
npx http-server output/CytAssist_FFPE_Human_Breast_Cancer/0.5.2 --port 3000 --cors
npx http-server output/CytAssist_FFPE_Human_Breast_Cancer/0.5.3 --port 3000 --cors
.. code-block:: shell
:caption: Output
@@ -204,4 +204,4 @@ at http://localhost:3000, and that CORS is enabled via the Access-Control-Allow-
Start your web browser and open:
https://webatlas.cog.sanger.ac.uk/latest/index.html?theme=dark&config=http://127.0.0.1:3000/visium-breast-cancer-config.json
https://webatlas.cog.sanger.ac.uk/latest/index.html?theme=dark&config=http://127.0.0.1:3000/visium-breast-cancer-config.json