hpcugent · laraPPr · Mar 6, 2024 · Mar 6, 2024 · Mar 6, 2024 · Mar 6, 2024
diff --git a/mkdocs/docs/HPC/only/gent/available_software/data/json_data.json b/mkdocs/docs/HPC/only/gent/available_software/data/json_data.json
diff --git a/mkdocs/docs/HPC/only/gent/available_software/data/json_data_detail.json b/mkdocs/docs/HPC/only/gent/available_software/data/json_data_detail.json
diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/ABAQUS.md b/mkdocs/docs/HPC/only/gent/available_software/detail/ABAQUS.md
@@ -6,6 +6,10 @@ hide:
 ABAQUS
 ======
 
+
+Finite Element Analysis software for modeling, visualization and best-in-class implicit and explicit dynamics FEA.
+
+https://www.simulia.com/products/abaqus_fea.html
 # Available modules
 
 
@@ -17,7 +21,7 @@ To start using ABAQUS, load one of these modules using a `module load` command l
 module load ABAQUS/2023
 ```
 
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+*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)*  
 
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diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/ABINIT.md b/mkdocs/docs/HPC/only/gent/available_software/detail/ABINIT.md
@@ -6,6 +6,10 @@ hide:
 ABINIT
 ======
 
+
+ABINIT is a package whose main program allows one to find the total energy, charge density and electronic structure ofsystems made of electrons and nuclei (molecules and periodic solids) within Density Functional Theory (DFT), usingpseudopotentials and a planewave or wavelet basis.
+
+https://www.abinit.org/
 # Available modules
 
 
@@ -17,7 +21,7 @@ To start using ABINIT, load one of these modules using a `module load` command l
 module load ABINIT/9.10.3-intel-2022a
 ```
 
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+*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)*  
 
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diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/ABRA2.md b/mkdocs/docs/HPC/only/gent/available_software/detail/ABRA2.md
@@ -6,6 +6,10 @@ hide:
 ABRA2
 =====
 
+
+Assembly Based ReAligner
+
+https://github.com/mozack/abra2
 # Available modules
 
 
@@ -17,7 +21,7 @@ To start using ABRA2, load one of these modules using a `module load` command li
 module load ABRA2/2.23-GCC-10.2.0
 ```
 
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+*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)*  
 
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diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/ABRicate.md b/mkdocs/docs/HPC/only/gent/available_software/detail/ABRicate.md
@@ -6,6 +6,10 @@ hide:
 ABRicate
 ========
 
+
+Mass screening of contigs for antimicrobial and virulence genes
+
+https://github.com/tseemann/abricate
 # Available modules
 
 
@@ -17,7 +21,7 @@ To start using ABRicate, load one of these modules using a `module load` command
 module load ABRicate/0.9.9-gompi-2019b
 ```
 
-*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)*  
+*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)*  
 
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diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/ABySS.md b/mkdocs/docs/HPC/only/gent/available_software/detail/ABySS.md
@@ -6,6 +6,10 @@ hide:
 ABySS
 =====
 
+
+Assembly By Short Sequences - a de novo, parallel, paired-end sequence assembler
+
+https://www.bcgsc.ca/platform/bioinfo/software/abyss
 # Available modules
 
 
@@ -17,7 +21,7 @@ To start using ABySS, load one of these modules using a `module load` command li
 module load ABySS/2.3.7-foss-2023a
 ```
 
-*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)*  
+*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)*  
 
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diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/ACTC.md b/mkdocs/docs/HPC/only/gent/available_software/detail/ACTC.md
@@ -6,6 +6,10 @@ hide:
 ACTC
 ====
 
+
+ACTC converts independent triangles into triangle strips or fans.
+
+https://sourceforge.net/projects/actc
 # Available modules
 
 
@@ -17,7 +21,7 @@ To start using ACTC, load one of these modules using a `module load` command lik
 module load ACTC/1.1-GCCcore-10.2.0
 ```
 
-*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)*  
+*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)*  
 
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diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/ADMIXTURE.md b/mkdocs/docs/HPC/only/gent/available_software/detail/ADMIXTURE.md
@@ -6,6 +6,10 @@ hide:
 ADMIXTURE
 =========
 
+
+ADMIXTURE is a software tool for maximum likelihood estimation of individual ancestries from multilocus SNP genotype datasets. It uses the same statistical model as STRUCTURE but calculates estimates much more rapidly using a fast numerical optimization algorithm.
+
+https://dalexander.github.io/admixture/
 # Available modules
 
 
@@ -17,7 +21,7 @@ To start using ADMIXTURE, load one of these modules using a `module load` comman
 module load ADMIXTURE/1.3.0
 ```
 
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diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/AICSImageIO.md b/mkdocs/docs/HPC/only/gent/available_software/detail/AICSImageIO.md
@@ -6,6 +6,10 @@ hide:
 AICSImageIO
 ===========
 
+
+Image Reading, Metadata Conversion, and Image Writing for Microscopy Images in Pure Python
+
+https://github.com/AllenCellModeling/aicsimageio
 # Available modules
 
 
@@ -17,8 +21,15 @@ To start using AICSImageIO, load one of these modules using a `module load` comm
 module load AICSImageIO/4.14.0-foss-2022a
 ```
 
-*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)*  
+*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)*  
 
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 |AICSImageIO/4.14.0-foss-2022a|x|x|x|x|x|x|
+
+
+### AICSImageIO/4.14.0-foss-2022a
+
+This is a list of extensions included in the module:
+
+%(namelower)s-4.14.0, elementpath-4.1.5, fsspec-2023.6.0, ome-zarr-0.8.3, ome_types-0.4.3, pydantic_compat-0.1.2, resource_backed_dask_array-0.1.0, xmlschema-2.5.0, xsdata-23.8
diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/AMAPVox.md b/mkdocs/docs/HPC/only/gent/available_software/detail/AMAPVox.md
@@ -6,6 +6,10 @@ hide:
 AMAPVox
 =======
 
+
+LiDAR data voxelisation software
+
+https://amap-dev.cirad.fr/projects/amapvox
 # Available modules
 
 
@@ -17,7 +21,7 @@ To start using AMAPVox, load one of these modules using a `module load` command
 module load AMAPVox/1.9.4-Java-11
 ```
 
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+*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)*  
 
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diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/AMICA.md b/mkdocs/docs/HPC/only/gent/available_software/detail/AMICA.md
@@ -6,6 +6,10 @@ hide:
 AMICA
 =====
 
+
+Code for AMICA: Adaptive Mixture ICA with shared components
+
+https://github.com/sccn/amica
 # Available modules
 
 
@@ -17,7 +21,7 @@ To start using AMICA, load one of these modules using a `module load` command li
 module load AMICA/2024.1.19-intel-2023a
 ```
 
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+*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)*  
 
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diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/AMOS.md b/mkdocs/docs/HPC/only/gent/available_software/detail/AMOS.md
@@ -6,6 +6,10 @@ hide:
 AMOS
 ====
 
+
+The AMOS consortium is committed to the development of open-source whole genome assembly software
+
+http://amos.sourceforge.net
 # Available modules
 
 
@@ -17,7 +21,7 @@ To start using AMOS, load one of these modules using a `module load` command lik
 module load AMOS/3.1.0-foss-2023a
 ```
 
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+*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)*  
 
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diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/AMPtk.md b/mkdocs/docs/HPC/only/gent/available_software/detail/AMPtk.md
@@ -6,6 +6,10 @@ hide:
 AMPtk
 =====
 
+
+AMPtk is a series of scripts to process NGS amplicon data using USEARCH and VSEARCH, it can also beused to process any NGS amplicon data and includes databases setup for analysis of fungal ITS, fungal LSU, bacterial16S, and insect COI amplicons.
+
+https://amptk.readthedocs.io
 # Available modules
 
 
@@ -17,8 +21,15 @@ To start using AMPtk, load one of these modules using a `module load` command li
 module load AMPtk/1.5.4-foss-2021b
 ```
 
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+*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)*  
 
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 |AMPtk/1.5.4-foss-2021b|x|x|x|-|x|x|
+
+
+### AMPtk/1.5.4-foss-2021b
+
+This is a list of extensions included in the module:
+
+amptk-1.5.4, distro-1.7.0, natsort-8.1.0, pyfastx-0.8.4
diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/ANTLR.md b/mkdocs/docs/HPC/only/gent/available_software/detail/ANTLR.md
@@ -6,6 +6,10 @@ hide:
 ANTLR
 =====
 
+
+ANTLR, ANother Tool for Language Recognition, (formerly PCCTS) is a language tool that provides a framework for constructing recognizers, compilers, and translators from grammatical descriptions containing Java, C#, C++, or Python actions.
+
+https://www.antlr2.org/
 # Available modules
 
 
@@ -17,7 +21,7 @@ To start using ANTLR, load one of these modules using a `module load` command li
 module load ANTLR/2.7.7-GCCcore-10.3.0-Java-11
 ```
 
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diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/ANTs.md b/mkdocs/docs/HPC/only/gent/available_software/detail/ANTs.md
@@ -6,6 +6,10 @@ hide:
 ANTs
 ====
 
+
+ANTs extracts information from complex datasets that include imaging. ANTs is useful for managing, interpreting and visualizing multidimensional data.
+
+https://stnava.github.io/ANTs/
 # Available modules
 
 
@@ -17,7 +21,7 @@ To start using ANTs, load one of these modules using a `module load` command lik
 module load ANTs/2.3.2-foss-2019b-Python-3.7.4
 ```
 
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diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/APR-util.md b/mkdocs/docs/HPC/only/gent/available_software/detail/APR-util.md
@@ -6,6 +6,10 @@ hide:
 APR-util
 ========
 
+
+Apache Portable Runtime (APR) util libraries.
+
+https://apr.apache.org/
 # Available modules
 
 
@@ -17,7 +21,7 @@ To start using APR-util, load one of these modules using a `module load` command
 module load APR-util/1.6.1-GCCcore-11.2.0
 ```
 
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diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/APR.md b/mkdocs/docs/HPC/only/gent/available_software/detail/APR.md
@@ -6,6 +6,10 @@ hide:
 APR
 ===
 
+
+Apache Portable Runtime (APR) libraries.
+
+https://apr.apache.org/
 # Available modules
 
 
@@ -17,7 +21,7 @@ To start using APR, load one of these modules using a `module load` command like
 module load APR/1.7.0-GCCcore-11.2.0
 ```
 
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diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/ARAGORN.md b/mkdocs/docs/HPC/only/gent/available_software/detail/ARAGORN.md
@@ -6,6 +6,10 @@ hide:
 ARAGORN
 =======
 
+
+a program to detect tRNA genes and tmRNA genes in nucleotide sequences
+
+http://mbio-serv2.mbioekol.lu.se/ARAGORN/
 # Available modules
 
 
@@ -17,7 +21,7 @@ To start using ARAGORN, load one of these modules using a `module load` command
 module load ARAGORN/1.2.41-foss-2021b
 ```
 
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diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/ASCAT.md b/mkdocs/docs/HPC/only/gent/available_software/detail/ASCAT.md
@@ -6,6 +6,10 @@ hide:
 ASCAT
 =====
 
+
+ASCAT is a method to derive copy number profiles of tumor cells, accounting for normal cell admixture and tumor aneuploidy.
+
+https://github.com/VanLoo-lab/ascat
 # Available modules
 
 
@@ -17,7 +21,7 @@ To start using ASCAT, load one of these modules using a `module load` command li
 module load ASCAT/3.1.2-foss-2022b-R-4.2.2
 ```
 
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