Interactive tools for analyzing genomics data.
This repository now only hosts code for our webserver and some legacy scripts. Please visit repositories for iDEP and ShinyGO, which are linked as submodules.
iDEP is a Shiny app for analyzing RNA-seq or other transcriptomic data. See documentation and paper. iDEP's younger, but more popular, sister, ShinyGO focuses on the enrichment analysis of gene lists. The same database is used. ShinyGO is published here.
iDEP and ShinyGO are both under active development, and have not been fully tested. With the help of many users, we are constantly fixing bugs/errors in both source code and sometimes database. We recommend that you confirm your findings using other tools before publishing or further studies.
