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convert_bids_to_nnUNetV2.py: Not up-to-date

Status: Open.

#57 In ivadomed/utilities;

· jcohenadad opened on Jun 23, 2025

convert_bids_to_nnUNetV2.py: Remove the need for <code>participants.tsv</code>

Status: Open.

#56 In ivadomed/utilities;

· jcohenadad opened on Jun 23, 2025

<code>compute_metrics_reloaded.py</code> - consider other output type than CSV

MetricsReloaded

Status: Open.

#51 In ivadomed/utilities;

· valosekj opened on Jun 3, 2024

<code>Dice Loss</code> vs <code>Dice Loss with smooting term</code>

discussion

ivadomed

nnU-Net

Status: Open.

#42 In ivadomed/utilities;

· valosekj opened on Feb 14, 2024

How to avoid inference script duplication

Status: Open.

#36 In ivadomed/utilities;

· hermancollin opened on Sep 20, 2023

How are model checkpoints packaged?

Status: Open.

#32 In ivadomed/utilities;

· hermancollin opened on Sep 19, 2023

Dataset use: How to be efficient with BIDS datasets

Status: Open.

#30 In ivadomed/utilities;

· NathanMolinier opened on Sep 18, 2023

Write a script for running MONAI inference

MONAI

Status: Open.

#24 In ivadomed/utilities;

· valosekj opened on Jul 14, 2023

Post-processing not included in run_inference.py

nnU-Net

Status: Open.

#23 In ivadomed/utilities;

· plbenveniste opened on Jul 11, 2023

Script to take BIDS dataset and generate MONAI-compatible JSON list of subjects for training

MONAI

Status: Open.

#21 In ivadomed/utilities;

· jcohenadad opened on Jul 11, 2023

json creation when converting from nnUNetV2 to BIDS

nnU-Net

Status: Open.

#20 In ivadomed/utilities;

· tzebre opened on Jun 27, 2023

Add softseg support for nnUNet

nnU-Net

Status: Open.

#16 In ivadomed/utilities;

· valosekj opened on Jun 22, 2023