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Test the quality of the samples in an Next Generation Sequencing dataset

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NGSQualityTester

How to use:

import QualityTester as QT

#matrix=Samples x Features
#labels=Samples : Integers corresponding to cluster assignement

qt = QT.QualityTester(Binary=False) #Binary=True  if dataset is binary. By default binary == false
qt.get_optimal_distance(matrix=np.transpose(matrix),labels=label,threshold = [0.05, 0.95])


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Test the quality of the samples in an Next Generation Sequencing dataset

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