Add mmcif compatibility to mdanalysis library

[joaomcteixeira]

Add mmcif compatibility to mdanalysis library.

See MDAnalysis/mdanalysis#2367 (comment)

[codecov-commenter]

Codecov Report

Merging #57 (6072acf) into master (ed69930) will not change coverage.
The diff coverage is 100.00%.

@@            Coverage Diff            @@
##            master       #57   +/-   ##
=========================================
  Coverage   100.00%   100.00%           
=========================================
  Files           21        22    +1     
  Lines         1122      1136   +14     
  Branches        84        85    +1     
=========================================
+ Hits          1122      1136   +14     

Impacted Files	Coverage Δ
src/taurenmd/libs/libmda.py	100.00% <100.00%> (ø)
src/taurenmd/libs/libmdt.py	100.00% <100.00%> (ø)
src/taurenmd/libs/libopenmm.py	100.00% <100.00%> (ø)

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[joaomcteixeira]

The feature is working perfectly when the client runs. Also, it works when importing manually from a script, for example:

import subprocess

cmd = 'taurenmd report tests/data/pcnaA_frame0.cif tests/data/pcnaA.dcd'

p = subprocess.run(cmd.split(), capture_output=True)
print(p)

from taurenmd.libs.libmda import load_universe

load_universe('tests/data/pcnaA_frame0.cif', 'tests/data/pcnaA.dcd')

But can't make it work in the test cases in tests_libmda.py...

[codeclimate]

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