remove unused code

jodyphelan · Nov 18, 2024 · 5d6c733 · 5d6c733
1 parent f557627
commit 5d6c733
Showing 1 changed file with 1 addition and 3 deletions.
diff --git a/tbprofiler/utils.py b/tbprofiler/utils.py
@@ -6,13 +6,11 @@
 import re
 
 def process_tb_profiler_args(args: argparse.Namespace) -> None:
-    if args.snp_dist or args.update_phylo:
+    if args.snp_dist:
         args.call_whole_genome = True
     args.call_lineage = False if args.no_lineage else True
     if args.vcf and args.spoligotype:
         args.spoligotype = False
-    if args.snp_dist or args.update_phylo:
-        args.call_whole_genome = True
 
 def get_vcf_samples(vcf_file):
     vcf = Vcf(vcf_file)