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chore(deps): bump actions/checkout from 4 to 6#2

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chore(deps): bump actions/checkout from 4 to 6#2
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@dependabot dependabot Bot commented on behalf of github Apr 15, 2026

Bumps actions/checkout from 4 to 6.

Release notes

Sourced from actions/checkout's releases.

v6.0.0

What's Changed

Full Changelog: actions/checkout@v5.0.0...v6.0.0

v6-beta

What's Changed

Updated persist-credentials to store the credentials under $RUNNER_TEMP instead of directly in the local git config.

This requires a minimum Actions Runner version of v2.329.0 to access the persisted credentials for Docker container action scenarios.

v5.0.1

What's Changed

Full Changelog: actions/checkout@v5...v5.0.1

v5.0.0

What's Changed

⚠️ Minimum Compatible Runner Version

v2.327.1
Release Notes

Make sure your runner is updated to this version or newer to use this release.

Full Changelog: actions/checkout@v4...v5.0.0

v4.3.1

What's Changed

Full Changelog: actions/checkout@v4...v4.3.1

v4.3.0

What's Changed

... (truncated)

Changelog

Sourced from actions/checkout's changelog.

Changelog

v6.0.2

v6.0.1

v6.0.0

v5.0.1

v5.0.0

v4.3.1

v4.3.0

v4.2.2

v4.2.1

v4.2.0

v4.1.7

v4.1.6

... (truncated)

Commits

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Bumps [actions/checkout](https://github.com/actions/checkout) from 4 to 6.
- [Release notes](https://github.com/actions/checkout/releases)
- [Changelog](https://github.com/actions/checkout/blob/main/CHANGELOG.md)
- [Commits](actions/checkout@v4...v6)

---
updated-dependencies:
- dependency-name: actions/checkout
  dependency-version: '6'
  dependency-type: direct:production
  update-type: version-update:semver-major
...

Signed-off-by: dependabot[bot] <[email protected]>
@dependabot dependabot Bot added dependencies Pull requests that update a dependency file github_actions Pull requests that update GitHub Actions code labels Apr 15, 2026
kostadis pushed a commit that referenced this pull request May 2, 2026
…ut, tests

Addresses the six Copilot review comments on the initial commit.

1) #6 (critical) — mcp_server.py `_get_collection` bypassed ChromaBackend

   The MCP server creates its palace collection directly via
   `chromadb.PersistentClient.get_or_create_collection` in `_get_collection`,
   not through `ChromaBackend.get_collection`. That path was missing the
   `hnsw:num_threads=1` metadata, so the primary crash surface for #974
   and #965 was untouched by the original patch. Fixed by passing
   `hnsw:num_threads=1` at the mcp_server create site too. Documented
   in a code comment that the setting is only honored at creation
   time — existing palaces created before this fix still need a
   `mempalace nuke` + re-mine to gain the protection.

2) #3 — mine_global_lock over-serialized mines across unrelated palaces

   Replaced the single global lock file `mine_global.lock` with a
   per-palace lock keyed by `sha256(os.path.abspath(palace_path))`
   (`mine_palace_<hash>.lock`). Mines against the same palace still
   collapse to a single runner (the correctness boundary), but mines
   against *different* palaces are now free to run in parallel.
   `mine_global_lock` is kept as a backward-compatible alias for
   `mine_palace_lock` so any external callers that imported the
   previous name keep working.

3) #1 — hook_precompact swallowed OSError but not subprocess.TimeoutExpired

   `subprocess.run(..., timeout=60)` raises `TimeoutExpired` on slow
   palaces. The previous `except OSError` clause didn't catch it, so
   the hook could raise and fail to emit any JSON decision — leaving
   the harness without a block/passthrough signal. Fixed by catching
   `(OSError, subprocess.TimeoutExpired)` together and always falling
   through to the block decision so the hook reliably emits a response.

4) #2 + #4 — tests

   - tests/test_hooks_cli.py: added
     `test_precompact_first_two_attempts_block`,
     `test_precompact_passes_through_after_cap`, and
     `test_precompact_counter_is_per_session` to lock in the #955
     deadlock fix.
   - tests/test_palace_locks.py (new): covers `mine_palace_lock`
     single-acquire, reuse-after-release, cross-process serialization
     on the same palace, non-interference across different palaces,
     path normalization, and the `mine_global_lock` back-compat alias.

5) #5 — known limitation, documented but not auto-fixed

   Copilot suggested detecting collections missing `hnsw:num_threads=1`
   and calling `collection.modify(metadata=...)` to retrofit existing
   palaces. Verified against chromadb 1.5.7: `modify(metadata=...)`
   replaces metadata rather than merging, and re-passing
   `hnsw:space="cosine"` then raises `ValueError: Changing the
   distance function of a collection once it is created is not
   supported currently.` The HNSW runtime configuration
   (`configuration_json`) also does not expose `num_threads` in
   chromadb 1.5.x, so the flag appears to be read only at creation
   time. Rather than paper over the limitation with a best-effort
   `modify` that silently drops `hnsw:space`, documented in the
   mcp_server comment that pre-existing palaces need a
   `mempalace nuke` + re-mine to gain the protection. Fresh palaces
   are always protected.

Testing
- pytest tests/test_palace_locks.py tests/test_hooks_cli.py
  tests/test_backends.py tests/test_cli.py → **98 passed, 0 failed**.
- Runtime validation with two concurrent `mempalace mine` calls:
  - Different palaces → both complete in parallel ✓
  - Same palace     → one completes, the other exits with
    "another `mine` is already running against <palace> — exiting
    cleanly." ✓
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